miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 37423 0.67 0.307057
Target:  5'- uGCGGCGAGuUGGUA-CGCGGCGGcGGc- -3'
miRNA:   3'- -CGCCGCUC-GUCGUcGUGCCGCU-CCau -5'
26268 3' -60.8 NC_005345.2 + 32989 0.67 0.338099
Target:  5'- uCGGCGcaGGCGGcCGGggUGGCGGGGg- -3'
miRNA:   3'- cGCCGC--UCGUC-GUCguGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 34612 0.67 0.338099
Target:  5'- -gGGCGAGgAGcCAGCguGCGGCGgucGGGg- -3'
miRNA:   3'- cgCCGCUCgUC-GUCG--UGCCGC---UCCau -5'
26268 3' -60.8 NC_005345.2 + 23810 0.67 0.338099
Target:  5'- gGCGGCGA-CAGCAGCGucgaucuuguuCGGgcuguCGGGGUu -3'
miRNA:   3'- -CGCCGCUcGUCGUCGU-----------GCC-----GCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 30675 0.67 0.337296
Target:  5'- cGCGGCGAGCAucuucgggucGCGGgACccgguccaccacgGGCGcAGGUu -3'
miRNA:   3'- -CGCCGCUCGU----------CGUCgUG-------------CCGC-UCCAu -5'
26268 3' -60.8 NC_005345.2 + 38997 0.67 0.325414
Target:  5'- uGCGGCGGGCGcuccGCAGaGCGGCcgccgccuguaccucGGGGa- -3'
miRNA:   3'- -CGCCGCUCGU----CGUCgUGCCG---------------CUCCau -5'
26268 3' -60.8 NC_005345.2 + 5328 0.67 0.322299
Target:  5'- cCGGCGAagcGCuGCAGUGCGGUGccGUGg -3'
miRNA:   3'- cGCCGCU---CGuCGUCGUGCCGCucCAU- -5'
26268 3' -60.8 NC_005345.2 + 43112 0.67 0.317668
Target:  5'- cGCGGUGAGCuGCAGUggcugcucgucguacACGGUGGugucGGg- -3'
miRNA:   3'- -CGCCGCUCGuCGUCG---------------UGCCGCU----CCau -5'
26268 3' -60.8 NC_005345.2 + 15547 0.67 0.314608
Target:  5'- cGCGGCgGAGaacaCGGCGGCAcCGGCGAc--- -3'
miRNA:   3'- -CGCCG-CUC----GUCGUCGU-GCCGCUccau -5'
26268 3' -60.8 NC_005345.2 + 2748 0.66 0.354454
Target:  5'- aGCGGCccgcaugugGAGCGcGCcacGCGCGGCGGccucGGUAc -3'
miRNA:   3'- -CGCCG---------CUCGU-CGu--CGUGCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 11633 0.66 0.354454
Target:  5'- cCGcCGAGCAgGCAuagacgccuGCACGGCGGcGGUAg -3'
miRNA:   3'- cGCcGCUCGU-CGU---------CGUGCCGCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 5065 0.66 0.361994
Target:  5'- cGCuGUGAGCAGCuGCAgcccaucggcgcuCGGCG-GGUc -3'
miRNA:   3'- -CGcCGCUCGUCGuCGU-------------GCCGCuCCAu -5'
26268 3' -60.8 NC_005345.2 + 32634 0.66 0.386156
Target:  5'- aGCGGCaugcggagccacgcGAGCAGCAGguCGaGCGcgagcAGGa- -3'
miRNA:   3'- -CGCCG--------------CUCGUCGUCguGC-CGC-----UCCau -5'
26268 3' -60.8 NC_005345.2 + 39455 0.66 0.380017
Target:  5'- cGCGGCGgcccgcugaucGGCcuGCAGCcgGCGGCGcucgcGGUAc -3'
miRNA:   3'- -CGCCGC-----------UCGu-CGUCG--UGCCGCu----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 46382 0.66 0.380017
Target:  5'- gGCGGCGAGCAGCcacGCcguccgaagGCGGCa----- -3'
miRNA:   3'- -CGCCGCUCGUCGu--CG---------UGCCGcuccau -5'
26268 3' -60.8 NC_005345.2 + 15267 0.66 0.377405
Target:  5'- cCGcGCGAGCGGCGucccccacgucgacGCcgaacgccuCGGCGAGGUu -3'
miRNA:   3'- cGC-CGCUCGUCGU--------------CGu--------GCCGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 18512 0.66 0.37136
Target:  5'- uCGaGCGAGUAcGCGGCGuCGGCGuccGGGg- -3'
miRNA:   3'- cGC-CGCUCGU-CGUCGU-GCCGC---UCCau -5'
26268 3' -60.8 NC_005345.2 + 7650 0.66 0.37136
Target:  5'- -aGGCGuGCGGCAGaGCGGCcgcugugaaGGGGa- -3'
miRNA:   3'- cgCCGCuCGUCGUCgUGCCG---------CUCCau -5'
26268 3' -60.8 NC_005345.2 + 43330 0.66 0.362839
Target:  5'- aGCgGGCGAGCugcuGCGcGUACGGCucgaccucGGGGUc -3'
miRNA:   3'- -CG-CCGCUCGu---CGU-CGUGCCG--------CUCCAu -5'
26268 3' -60.8 NC_005345.2 + 7514 0.66 0.362839
Target:  5'- uCGGUGGGCGuGCuGC-CGGCGGcGGUc -3'
miRNA:   3'- cGCCGCUCGU-CGuCGuGCCGCU-CCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.