miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 34099 0.66 0.475942
Target:  5'- cGGCGccCGCGACgGCgacaUCGCCgCCGACg -3'
miRNA:   3'- -UCGUcaGUGCUGaCG----AGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 33338 0.66 0.486066
Target:  5'- cGCGGUCGCGGCguagccggcgUGC-CGCCCacaCCgGACg -3'
miRNA:   3'- uCGUCAGUGCUG----------ACGaGUGGG---GG-CUG- -5'
26268 5' -58.3 NC_005345.2 + 31836 0.66 0.52752
Target:  5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3'
miRNA:   3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 31322 0.67 0.464928
Target:  5'- cGCGGUCugGAggGCggCcggacgugaccauGCCCCCGAUc -3'
miRNA:   3'- uCGUCAGugCUgaCGa-G-------------UGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 30365 0.67 0.426996
Target:  5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3'
miRNA:   3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29784 0.77 0.105722
Target:  5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3'
miRNA:   3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29152 0.67 0.426996
Target:  5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3'
miRNA:   3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 27848 0.67 0.465924
Target:  5'- cGguGUgGcCGAUccucgGCggCGCCCCCGACg -3'
miRNA:   3'- uCguCAgU-GCUGa----CGa-GUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 26515 0.67 0.465924
Target:  5'- uGCGGaCACGAUcGg-CGCCCUCGACa -3'
miRNA:   3'- uCGUCaGUGCUGaCgaGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 25681 0.7 0.285273
Target:  5'- cGguG-CAcCGGCUGCUCGCgCUCGGCg -3'
miRNA:   3'- uCguCaGU-GCUGACGAGUGgGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 25186 0.69 0.314196
Target:  5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3'
miRNA:   3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 24936 0.68 0.408268
Target:  5'- gAGCAGccgcCGCGAUcgaaCUCGgCCCCGACg -3'
miRNA:   3'- -UCGUCa---GUGCUGac--GAGUgGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 23707 0.67 0.456016
Target:  5'- gAGCGGUaCGgGGCUcugcGCUCGCuUCCUGGCg -3'
miRNA:   3'- -UCGUCA-GUgCUGA----CGAGUG-GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 22758 0.72 0.211681
Target:  5'- aGGuCGGUCGCGucgaGCUGCccgaacugcguguucUCACCCuCCGACg -3'
miRNA:   3'- -UC-GUCAGUGC----UGACG---------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 22712 0.68 0.367204
Target:  5'- gAGCAuGUCGCGcACgucGCUCGCgugcucuuucaggaaCCCCGACn -3'
miRNA:   3'- -UCGU-CAGUGC-UGa--CGAGUG---------------GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 20896 0.68 0.408268
Target:  5'- cGCAcUCAcugcccCGAUUGacagCGCCCCCGACa -3'
miRNA:   3'- uCGUcAGU------GCUGACga--GUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 20609 0.75 0.132168
Target:  5'- gAGCcgAGcCACGACUGaucgUCGCCCCCGAa -3'
miRNA:   3'- -UCG--UCaGUGCUGACg---AGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 20040 0.68 0.399099
Target:  5'- gAGCAGcCGCGGCggaugGUUCacggaGCCCUCGAa -3'
miRNA:   3'- -UCGUCaGUGCUGa----CGAG-----UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 18912 0.69 0.346936
Target:  5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3'
miRNA:   3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 18367 0.67 0.465924
Target:  5'- cGCcGUCACaGgaGUaCACCCCCGAUg -3'
miRNA:   3'- uCGuCAGUGcUgaCGaGUGGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.