Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 26515 | 0.67 | 0.465924 |
Target: 5'- uGCGGaCACGAUcGg-CGCCCUCGACa -3' miRNA: 3'- uCGUCaGUGCUGaCgaGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 18367 | 0.67 | 0.465924 |
Target: 5'- cGCcGUCACaGgaGUaCACCCCCGAUg -3' miRNA: 3'- uCGuCAGUGcUgaCGaGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 16548 | 0.67 | 0.455032 |
Target: 5'- uGC-GUCACaccggguGGCUGCUCACCgUCgCGACg -3' miRNA: 3'- uCGuCAGUG-------CUGACGAGUGG-GG-GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 12651 | 0.67 | 0.426996 |
Target: 5'- gAGCGGgcgCACuGGCUGaacugCGCCCCCacGGCa -3' miRNA: 3'- -UCGUCa--GUG-CUGACga---GUGGGGG--CUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14339 | 0.66 | 0.486066 |
Target: 5'- gGGCAGgcgCACGGCgUGCgcgaggacCGCgaCCCGGCg -3' miRNA: 3'- -UCGUCa--GUGCUG-ACGa-------GUGg-GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 5217 | 0.66 | 0.475942 |
Target: 5'- gGGCAGcUCGCGGCcgGcCUgAUCgCCGACg -3' miRNA: 3'- -UCGUC-AGUGCUGa-C-GAgUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 23707 | 0.67 | 0.456016 |
Target: 5'- gAGCGGUaCGgGGCUcugcGCUCGCuUCCUGGCg -3' miRNA: 3'- -UCGUCA-GUgCUGA----CGAGUG-GGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 24936 | 0.68 | 0.408268 |
Target: 5'- gAGCAGccgcCGCGAUcgaaCUCGgCCCCGACg -3' miRNA: 3'- -UCGUCa---GUGCUGac--GAGUgGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 37855 | 0.66 | 0.475942 |
Target: 5'- cGGuCGGUCGCGGCcggcgagGCUCAggCCCgGACg -3' miRNA: 3'- -UC-GUCAGUGCUGa------CGAGUg-GGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 20896 | 0.68 | 0.408268 |
Target: 5'- cGCAcUCAcugcccCGAUUGacagCGCCCCCGACa -3' miRNA: 3'- uCGUcAGU------GCUGACga--GUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 31322 | 0.67 | 0.464928 |
Target: 5'- cGCGGUCugGAggGCggCcggacgugaccauGCCCCCGAUc -3' miRNA: 3'- uCGUCAGugCUgaCGa-G-------------UGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 27848 | 0.67 | 0.465924 |
Target: 5'- cGguGUgGcCGAUccucgGCggCGCCCCCGACg -3' miRNA: 3'- uCguCAgU-GCUGa----CGa-GUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 43406 | 0.67 | 0.456016 |
Target: 5'- cGCAGUCcuCGGCUGCg-GCCCggaacacggCCGGCc -3' miRNA: 3'- uCGUCAGu-GCUGACGagUGGG---------GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8919 | 0.67 | 0.456016 |
Target: 5'- cGCcaGGaUCACGGCgGC-CGCCCCCGuggGCg -3' miRNA: 3'- uCG--UC-AGUGCUGaCGaGUGGGGGC---UG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 15154 | 0.67 | 0.446223 |
Target: 5'- gGGCGGguUCACGACcacgaugggguUGCUCauggccccACCCUCGAUc -3' miRNA: 3'- -UCGUC--AGUGCUG-----------ACGAG--------UGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 36436 | 0.67 | 0.427946 |
Target: 5'- uGCGGUacgcgcugucccgcUACGGCUcGCUCGCCucggccuacaaccgaCCCGGCg -3' miRNA: 3'- uCGUCA--------------GUGCUGA-CGAGUGG---------------GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 31836 | 0.66 | 0.52752 |
Target: 5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3' miRNA: 3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 33338 | 0.66 | 0.486066 |
Target: 5'- cGCGGUCGCGGCguagccggcgUGC-CGCCCacaCCgGACg -3' miRNA: 3'- uCGUCAGUGCUG----------ACGaGUGGG---GG-CUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 34099 | 0.66 | 0.475942 |
Target: 5'- cGGCGccCGCGACgGCgacaUCGCCgCCGACg -3' miRNA: 3'- -UCGUcaGUGCUGaCG----AGUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8869 | 0.66 | 0.475942 |
Target: 5'- cGCGG-CAUGAC-GCUCuccggacucauGCCCgCCGGCg -3' miRNA: 3'- uCGUCaGUGCUGaCGAG-----------UGGG-GGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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