miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 5' -60 NC_005345.2 + 40046 1.04 0.000716
Target:  5'- cUUCGAUCACCGCGACGUGCGGGCGGUc -3'
miRNA:   3'- -AAGCUAGUGGCGCUGCACGCCCGCCA- -5'
26269 5' -60 NC_005345.2 + 40323 0.73 0.141935
Target:  5'- aUCGAcgacgcguUCACCGCGcCGUgGCGGGCGa- -3'
miRNA:   3'- aAGCU--------AGUGGCGCuGCA-CGCCCGCca -5'
26269 5' -60 NC_005345.2 + 21837 0.73 0.153924
Target:  5'- aUCGAcugCugCGCGgcauGCGUGCGGGCGa- -3'
miRNA:   3'- aAGCUa--GugGCGC----UGCACGCCCGCca -5'
26269 5' -60 NC_005345.2 + 48888 0.73 0.15812
Target:  5'- -cCGAcgUgGCgGCGAgGUGCGGGCGGc -3'
miRNA:   3'- aaGCU--AgUGgCGCUgCACGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 14575 0.73 0.162419
Target:  5'- -cCGA-CACgGCGGacaGUGCGGGCGGc -3'
miRNA:   3'- aaGCUaGUGgCGCUg--CACGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 7099 0.72 0.172708
Target:  5'- -aCGGUCGaaacggcCCGCGACGUGUggcgccgcgcgaaccGGGCGGg -3'
miRNA:   3'- aaGCUAGU-------GGCGCUGCACG---------------CCCGCCa -5'
26269 5' -60 NC_005345.2 + 29415 0.72 0.180683
Target:  5'- cUCGGUCGCCucGCgGGCGuUGCGGGCGu- -3'
miRNA:   3'- aAGCUAGUGG--CG-CUGC-ACGCCCGCca -5'
26269 5' -60 NC_005345.2 + 41256 0.71 0.222716
Target:  5'- gUCGucAUCACCGUGuCGgggaccgGCGGGUGGg -3'
miRNA:   3'- aAGC--UAGUGGCGCuGCa------CGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 9642 0.7 0.25302
Target:  5'- -cCGAg-ACCGaCGGCGUGUGgGGCGGg -3'
miRNA:   3'- aaGCUagUGGC-GCUGCACGC-CCGCCa -5'
26269 5' -60 NC_005345.2 + 8687 0.7 0.25302
Target:  5'- -gCGGUgGCCGUGACGU--GGGCGGc -3'
miRNA:   3'- aaGCUAgUGGCGCUGCAcgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 11580 0.69 0.272783
Target:  5'- cUCGAcgacgggcgccUCGCgGUGGCGUG-GGGCGGc -3'
miRNA:   3'- aAGCU-----------AGUGgCGCUGCACgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 11804 0.69 0.27757
Target:  5'- cUCGGgcaCGCCGCGGCGUucgacaaccggaccGUGGGCGa- -3'
miRNA:   3'- aAGCUa--GUGGCGCUGCA--------------CGCCCGCca -5'
26269 5' -60 NC_005345.2 + 29046 0.69 0.286635
Target:  5'- gUUCGAguuUCugCGUGGCGgcgGCGGGCu-- -3'
miRNA:   3'- -AAGCU---AGugGCGCUGCa--CGCCCGcca -5'
26269 5' -60 NC_005345.2 + 9337 0.69 0.301035
Target:  5'- -gCGAcCAgUGCGACGcaugguggcUGCGGGCGGc -3'
miRNA:   3'- aaGCUaGUgGCGCUGC---------ACGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 35006 0.69 0.301035
Target:  5'- -cCGGggCGCUGCGgcggccACGUGgGGGCGGg -3'
miRNA:   3'- aaGCUa-GUGGCGC------UGCACgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 34733 0.69 0.301035
Target:  5'- cUCGAUCGCCcggcaggcgucgGCGACGUGCaGcCGGa -3'
miRNA:   3'- aAGCUAGUGG------------CGCUGCACGcCcGCCa -5'
26269 5' -60 NC_005345.2 + 45819 0.69 0.301035
Target:  5'- gUCGucgCgACCGUGACGUGCacGGCGGc -3'
miRNA:   3'- aAGCua-G-UGGCGCUGCACGc-CCGCCa -5'
26269 5' -60 NC_005345.2 + 25032 0.68 0.308442
Target:  5'- cUCGGUCACCGCGGCGauacGCacgaGCGGc -3'
miRNA:   3'- aAGCUAGUGGCGCUGCa---CGcc--CGCCa -5'
26269 5' -60 NC_005345.2 + 2814 0.68 0.308442
Target:  5'- cUCGAUCgccugcuccagcGCCGCGaggccgacaGCGUGCgcucGGGCGGc -3'
miRNA:   3'- aAGCUAG------------UGGCGC---------UGCACG----CCCGCCa -5'
26269 5' -60 NC_005345.2 + 43930 0.68 0.308442
Target:  5'- -gCGAUCaggccgGCCGCGAgcugcccggcCGUGCcgGGGCGGa -3'
miRNA:   3'- aaGCUAG------UGGCGCU----------GCACG--CCCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.