miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 5' -60 NC_005345.2 + 864 0.66 0.445391
Target:  5'- -aCGAUCAgCGCGcacugcGCGcgGuCGGGCGGc -3'
miRNA:   3'- aaGCUAGUgGCGC------UGCa-C-GCCCGCCa -5'
26269 5' -60 NC_005345.2 + 2814 0.68 0.308442
Target:  5'- cUCGAUCgccugcuccagcGCCGCGaggccgacaGCGUGCgcucGGGCGGc -3'
miRNA:   3'- aAGCUAG------------UGGCGC---------UGCACG----CCCGCCa -5'
26269 5' -60 NC_005345.2 + 3422 0.67 0.355786
Target:  5'- -gCGGcgGgCGCGGCG-GCGGGCGGc -3'
miRNA:   3'- aaGCUagUgGCGCUGCaCGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 3936 0.66 0.417176
Target:  5'- gUCGAggugcUCGCCGCGGcCGgcagccucuCGGGCGGc -3'
miRNA:   3'- aAGCU-----AGUGGCGCU-GCac-------GCCCGCCa -5'
26269 5' -60 NC_005345.2 + 4390 0.66 0.43209
Target:  5'- gUCGGUCACCGUGAUucuccugucagucaGUGCgagcugugccacgGGGCGa- -3'
miRNA:   3'- aAGCUAGUGGCGCUG--------------CACG-------------CCCGCca -5'
26269 5' -60 NC_005345.2 + 5246 0.67 0.364157
Target:  5'- -gCGGUaCACgGUgGGCGUGaCGGGCGGc -3'
miRNA:   3'- aaGCUA-GUGgCG-CUGCAC-GCCCGCCa -5'
26269 5' -60 NC_005345.2 + 7099 0.72 0.172708
Target:  5'- -aCGGUCGaaacggcCCGCGACGUGUggcgccgcgcgaaccGGGCGGg -3'
miRNA:   3'- aaGCUAGU-------GGCGCUGCACG---------------CCCGCCa -5'
26269 5' -60 NC_005345.2 + 8687 0.7 0.25302
Target:  5'- -gCGGUgGCCGUGACGU--GGGCGGc -3'
miRNA:   3'- aaGCUAgUGGCGCUGCAcgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 8726 0.66 0.417176
Target:  5'- -cCGAUCGCCGCGuCGgugGCGaGCGcGa -3'
miRNA:   3'- aaGCUAGUGGCGCuGCa--CGCcCGC-Ca -5'
26269 5' -60 NC_005345.2 + 8924 0.68 0.339453
Target:  5'- --gGAUCACgGCGGCcgcccccGUGGGCGGg -3'
miRNA:   3'- aagCUAGUGgCGCUGca-----CGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 9337 0.69 0.301035
Target:  5'- -gCGAcCAgUGCGACGcaugguggcUGCGGGCGGc -3'
miRNA:   3'- aaGCUaGUgGCGCUGC---------ACGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 9642 0.7 0.25302
Target:  5'- -cCGAg-ACCGaCGGCGUGUGgGGCGGg -3'
miRNA:   3'- aaGCUagUGGC-GCUGCACGC-CCGCCa -5'
26269 5' -60 NC_005345.2 + 10090 0.66 0.455032
Target:  5'- cUCGAUCGCCGCcuGCGUaGCGcccaccGGcCGGUu -3'
miRNA:   3'- aAGCUAGUGGCGc-UGCA-CGC------CC-GCCA- -5'
26269 5' -60 NC_005345.2 + 10781 0.66 0.435867
Target:  5'- gUCGAgacaGCCGCGcuGCG-GCaGGCGGa -3'
miRNA:   3'- aAGCUag--UGGCGC--UGCaCGcCCGCCa -5'
26269 5' -60 NC_005345.2 + 11378 0.66 0.408016
Target:  5'- -cCGGUCGCgGCcGCcUGCGGGCGa- -3'
miRNA:   3'- aaGCUAGUGgCGcUGcACGCCCGCca -5'
26269 5' -60 NC_005345.2 + 11580 0.69 0.272783
Target:  5'- cUCGAcgacgggcgccUCGCgGUGGCGUG-GGGCGGc -3'
miRNA:   3'- aAGCU-----------AGUGgCGCUGCACgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 11804 0.69 0.27757
Target:  5'- cUCGGgcaCGCCGCGGCGUucgacaaccggaccGUGGGCGa- -3'
miRNA:   3'- aAGCUa--GUGGCGCUGCA--------------CGCCCGCca -5'
26269 5' -60 NC_005345.2 + 14575 0.73 0.162419
Target:  5'- -cCGA-CACgGCGGacaGUGCGGGCGGc -3'
miRNA:   3'- aaGCUaGUGgCGCUg--CACGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 14917 0.68 0.347551
Target:  5'- -gCGGgccgCGgCGCGGCGgcugcaGCGGGCGGc -3'
miRNA:   3'- aaGCUa---GUgGCGCUGCa-----CGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 19064 0.68 0.308442
Target:  5'- -gUGGUCGCCuacggggucuacGCGAuCGUGCGGGCcGUg -3'
miRNA:   3'- aaGCUAGUGG------------CGCU-GCACGCCCGcCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.