miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 5' -60 NC_005345.2 + 40323 0.73 0.141935
Target:  5'- aUCGAcgacgcguUCACCGCGcCGUgGCGGGCGa- -3'
miRNA:   3'- aAGCU--------AGUGGCGCuGCA-CGCCCGCca -5'
26269 5' -60 NC_005345.2 + 28392 0.66 0.42646
Target:  5'- -aCGcgcCGCCGCGGCGgcagcggcagGCaGGGCGGa -3'
miRNA:   3'- aaGCua-GUGGCGCUGCa---------CG-CCCGCCa -5'
26269 5' -60 NC_005345.2 + 10781 0.66 0.435867
Target:  5'- gUCGAgacaGCCGCGcuGCG-GCaGGCGGa -3'
miRNA:   3'- aAGCUag--UGGCGC--UGCaCGcCCGCCa -5'
26269 5' -60 NC_005345.2 + 28514 0.66 0.455032
Target:  5'- cUCGAUCAagaCGCaGACGUucGgGGGCGa- -3'
miRNA:   3'- aAGCUAGUg--GCG-CUGCA--CgCCCGCca -5'
26269 5' -60 NC_005345.2 + 8687 0.7 0.25302
Target:  5'- -gCGGUgGCCGUGACGU--GGGCGGc -3'
miRNA:   3'- aaGCUAgUGGCGCUGCAcgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 11580 0.69 0.272783
Target:  5'- cUCGAcgacgggcgccUCGCgGUGGCGUG-GGGCGGc -3'
miRNA:   3'- aAGCU-----------AGUGgCGCUGCACgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 29046 0.69 0.286635
Target:  5'- gUUCGAguuUCugCGUGGCGgcgGCGGGCu-- -3'
miRNA:   3'- -AAGCU---AGugGCGCUGCa--CGCCCGcca -5'
26269 5' -60 NC_005345.2 + 9337 0.69 0.301035
Target:  5'- -gCGAcCAgUGCGACGcaugguggcUGCGGGCGGc -3'
miRNA:   3'- aaGCUaGUgGCGCUGC---------ACGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 14917 0.68 0.347551
Target:  5'- -gCGGgccgCGgCGCGGCGgcugcaGCGGGCGGc -3'
miRNA:   3'- aaGCUa---GUgGCGCUGCa-----CGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 34748 0.66 0.408016
Target:  5'- -gUGAUCcUCGCGGCG-GCG-GCGGUg -3'
miRNA:   3'- aaGCUAGuGGCGCUGCaCGCcCGCCA- -5'
26269 5' -60 NC_005345.2 + 41866 0.67 0.398982
Target:  5'- -gCGGuUCGCCucgGCGAuCGcGCGGGCGGc -3'
miRNA:   3'- aaGCU-AGUGG---CGCU-GCaCGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 8924 0.68 0.339453
Target:  5'- --gGAUCACgGCGGCcgcccccGUGGGCGGg -3'
miRNA:   3'- aagCUAGUGgCGCUGca-----CGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 7099 0.72 0.172708
Target:  5'- -aCGGUCGaaacggcCCGCGACGUGUggcgccgcgcgaaccGGGCGGg -3'
miRNA:   3'- aaGCUAGU-------GGCGCUGCACG---------------CCCGCCa -5'
26269 5' -60 NC_005345.2 + 11378 0.66 0.408016
Target:  5'- -cCGGUCGCgGCcGCcUGCGGGCGa- -3'
miRNA:   3'- aaGCUAGUGgCGcUGcACGCCCGCca -5'
26269 5' -60 NC_005345.2 + 41256 0.71 0.222716
Target:  5'- gUCGucAUCACCGUGuCGgggaccgGCGGGUGGg -3'
miRNA:   3'- aAGC--UAGUGGCGCuGCa------CGCCCGCCa -5'
26269 5' -60 NC_005345.2 + 19064 0.68 0.308442
Target:  5'- -gUGGUCGCCuacggggucuacGCGAuCGUGCGGGCcGUg -3'
miRNA:   3'- aaGCUAGUGG------------CGCU-GCACGCCCGcCA- -5'
26269 5' -60 NC_005345.2 + 31178 0.66 0.408016
Target:  5'- aUCGAg-GCCGCGGCccgGCaGGCGGc -3'
miRNA:   3'- aAGCUagUGGCGCUGca-CGcCCGCCa -5'
26269 5' -60 NC_005345.2 + 40495 0.66 0.435867
Target:  5'- --aGAUCGCCGCGACGauCGGcGCcgaGGUg -3'
miRNA:   3'- aagCUAGUGGCGCUGCacGCC-CG---CCA- -5'
26269 5' -60 NC_005345.2 + 9642 0.7 0.25302
Target:  5'- -cCGAg-ACCGaCGGCGUGUGgGGCGGg -3'
miRNA:   3'- aaGCUagUGGC-GCUGCACGC-CCGCCa -5'
26269 5' -60 NC_005345.2 + 11804 0.69 0.27757
Target:  5'- cUCGGgcaCGCCGCGGCGUucgacaaccggaccGUGGGCGa- -3'
miRNA:   3'- aAGCUa--GUGGCGCUGCA--------------CGCCCGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.