Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26270 | 5' | -58 | NC_005345.2 | + | 43114 | 0.7 | 0.280294 |
Target: 5'- cGGUgagcuGCAGUGGCUGCUCGUcguacacGGUGg -3' miRNA: 3'- uCCGacu--UGUCGCCGACGGGCA-------UCAC- -5' |
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26270 | 5' | -58 | NC_005345.2 | + | 44260 | 0.66 | 0.471934 |
Target: 5'- cGGCgagcaucGAcucGCAGCGGC-GCCgGUAGUc -3' miRNA: 3'- uCCGa------CU---UGUCGCCGaCGGgCAUCAc -5' |
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26270 | 5' | -58 | NC_005345.2 | + | 46022 | 0.66 | 0.502771 |
Target: 5'- cGGCUGuGCAGUGGCgccucgGCgCGaAGUa -3' miRNA: 3'- uCCGACuUGUCGCCGa-----CGgGCaUCAc -5' |
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26270 | 5' | -58 | NC_005345.2 | + | 47328 | 0.68 | 0.376842 |
Target: 5'- aAGGCgggUGAGCAGCaGUgaagaagaucauUGCCCGUgcGGUGu -3' miRNA: 3'- -UCCG---ACUUGUCGcCG------------ACGGGCA--UCAC- -5' |
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26270 | 5' | -58 | NC_005345.2 | + | 47715 | 0.71 | 0.260286 |
Target: 5'- aGGGCgaaGAGCuGCGGCUGCCagcuGUGc -3' miRNA: 3'- -UCCGa--CUUGuCGCCGACGGgcauCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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