miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 23351 0.67 0.289333
Target:  5'- aGACCGUGcugcGCUgggaGCGGGCCGagGCGCc -3'
miRNA:   3'- gCUGGCAC----UGGg---UGUCCGGCg-CGCGu -5'
26271 3' -62 NC_005345.2 + 37823 0.68 0.262448
Target:  5'- aCGGCCGgaacGGCCCGgGGGCCcugacUGUGCGg -3'
miRNA:   3'- -GCUGGCa---CUGGGUgUCCGGc----GCGCGU- -5'
26271 3' -62 NC_005345.2 + 2044 0.7 0.204114
Target:  5'- gGGcCCGgcgcGGCCCgGCGGGCCGCG-GCGa -3'
miRNA:   3'- gCU-GGCa---CUGGG-UGUCCGGCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 20203 0.72 0.137803
Target:  5'- uCGugCGUGucCCCAUAGacccGCCGCaGCGCAu -3'
miRNA:   3'- -GCugGCACu-GGGUGUC----CGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 3273 0.66 0.341483
Target:  5'- aGACCGUGAUCgACGGcGUCGgGCu-- -3'
miRNA:   3'- gCUGGCACUGGgUGUC-CGGCgCGcgu -5'
26271 3' -62 NC_005345.2 + 30441 0.67 0.303567
Target:  5'- cCGACCGggcacACCCccgauccggGCAcGCUGCGCGCGa -3'
miRNA:   3'- -GCUGGCac---UGGG---------UGUcCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 17916 0.68 0.249784
Target:  5'- cCGACCccgGACCCGCcguacacccGGCCGCacccggguGCGCAc -3'
miRNA:   3'- -GCUGGca-CUGGGUGu--------CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 45563 0.73 0.111112
Target:  5'- gGGCCGacGACCCGCAGG-UGCGCGaCAc -3'
miRNA:   3'- gCUGGCa-CUGGGUGUCCgGCGCGC-GU- -5'
26271 3' -62 NC_005345.2 + 14616 0.67 0.303567
Target:  5'- uCGACgGguacGCCCGCgAGGCCGCG-GCc -3'
miRNA:   3'- -GCUGgCac--UGGGUG-UCCGGCGCgCGu -5'
26271 3' -62 NC_005345.2 + 9495 0.74 0.105238
Target:  5'- aGACCGagUGGCaguCGCGGGCCcuguGCGCGCAg -3'
miRNA:   3'- gCUGGC--ACUGg--GUGUCCGG----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 31863 0.68 0.249784
Target:  5'- cCGGCCGacaaGACCCGCgcgcagaccAGGaCCGCgGCGCc -3'
miRNA:   3'- -GCUGGCa---CUGGGUG---------UCC-GGCG-CGCGu -5'
26271 3' -62 NC_005345.2 + 9688 0.67 0.289333
Target:  5'- cCGGCUGcaGGCCgaucaGCGGGCCGcCGCGUg -3'
miRNA:   3'- -GCUGGCa-CUGGg----UGUCCGGC-GCGCGu -5'
26271 3' -62 NC_005345.2 + 24487 0.69 0.224267
Target:  5'- aCGGCCGgucccgGGCCCGCGGGauccuggucgaccaCCGCGagGCGc -3'
miRNA:   3'- -GCUGGCa-----CUGGGUGUCC--------------GGCGCg-CGU- -5'
26271 3' -62 NC_005345.2 + 7572 0.69 0.214805
Target:  5'- aCGACCGagcacGCCCGCGagcacGGCgagCGCGCGCAc -3'
miRNA:   3'- -GCUGGCac---UGGGUGU-----CCG---GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 2368 0.7 0.184113
Target:  5'- aCGGCgCGUGACCUcCccGUCGCGCGCc -3'
miRNA:   3'- -GCUG-GCACUGGGuGucCGGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 26787 0.72 0.141527
Target:  5'- gGAUCGUGGCCgGC--GCCGCGuCGCAg -3'
miRNA:   3'- gCUGGCACUGGgUGucCGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 27291 0.66 0.352695
Target:  5'- aGACC--GACCUGCAGcucgcccgcacgcauGCCGCGCaGCAg -3'
miRNA:   3'- gCUGGcaCUGGGUGUC---------------CGGCGCG-CGU- -5'
26271 3' -62 NC_005345.2 + 10411 0.66 0.341483
Target:  5'- ---gCGUGACgCUguGCgAGGUCGCGCGCGa -3'
miRNA:   3'- gcugGCACUG-GG--UG-UCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 3581 0.66 0.332856
Target:  5'- cCGGCCGcaaccGGCCCGCcccgaccucGGCCGCugucgcccugcucGCGCAg -3'
miRNA:   3'- -GCUGGCa----CUGGGUGu--------CCGGCG-------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 27558 0.67 0.310884
Target:  5'- uCGGCuCGUcgGACCCcgGC-GGCCGgGCGCc -3'
miRNA:   3'- -GCUG-GCA--CUGGG--UGuCCGGCgCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.