miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 36567 1.09 0.000673
Target:  5'- cGAUCGCGGCCGCAACAGCGAAGAGGAc -3'
miRNA:   3'- -CUAGCGCCGGCGUUGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 39757 0.76 0.148836
Target:  5'- --aCGCGccGUCGaCGACGGCGAGGAGGAg -3'
miRNA:   3'- cuaGCGC--CGGC-GUUGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 29907 0.75 0.185377
Target:  5'- cGGUCGCGGUCGCcgagcaccucgAAgAGCaGggGAGGAc -3'
miRNA:   3'- -CUAGCGCCGGCG-----------UUgUCG-CuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 8842 0.74 0.217778
Target:  5'- --cCGCGGCUGCGgcACGGUGAAcGGGGGc -3'
miRNA:   3'- cuaGCGCCGGCGU--UGUCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 25184 0.73 0.235727
Target:  5'- -cUCGCGGCCGCGACAGCa------- -3'
miRNA:   3'- cuAGCGCCGGCGUUGUCGcuucuccu -5'
26272 3' -56.4 NC_005345.2 + 7663 0.73 0.235727
Target:  5'- ---aGCGGCCGCu---GUGAAGGGGAg -3'
miRNA:   3'- cuagCGCCGGCGuuguCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 8525 0.73 0.261571
Target:  5'- -cUCGCcauGCCGCGGCucGCGGAGAGGu -3'
miRNA:   3'- cuAGCGc--CGGCGUUGu-CGCUUCUCCu -5'
26272 3' -56.4 NC_005345.2 + 36251 0.72 0.268382
Target:  5'- ---gGCGGCCGUcGCGGCGAucGAGGc -3'
miRNA:   3'- cuagCGCCGGCGuUGUCGCUu-CUCCu -5'
26272 3' -56.4 NC_005345.2 + 11610 0.72 0.29706
Target:  5'- ---gGCGGCCGCuggcgggaGugGGCGGAGAGcGAg -3'
miRNA:   3'- cuagCGCCGGCG--------UugUCGCUUCUC-CU- -5'
26272 3' -56.4 NC_005345.2 + 28400 0.71 0.312269
Target:  5'- --cCGCGGCgGCAGCGGC-AGGcAGGGc -3'
miRNA:   3'- cuaGCGCCGgCGUUGUCGcUUC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 12368 0.71 0.320092
Target:  5'- --aCGgGGCCcgacGCcucGCAGCGGAGGGGAa -3'
miRNA:   3'- cuaGCgCCGG----CGu--UGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 14931 0.7 0.361391
Target:  5'- ---gGCGGCUGCAgcggGCGGCGgcGaAGGAu -3'
miRNA:   3'- cuagCGCCGGCGU----UGUCGCuuC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 40486 0.7 0.361391
Target:  5'- --cCGCGGCgaGCAgcagcACGGCGAGGuAGGGa -3'
miRNA:   3'- cuaGCGCCGg-CGU-----UGUCGCUUC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 15644 0.7 0.370084
Target:  5'- cGGUCGgGGCCGCAAU-GCGAccGGGc -3'
miRNA:   3'- -CUAGCgCCGGCGUUGuCGCUucUCCu -5'
26272 3' -56.4 NC_005345.2 + 16479 0.7 0.378918
Target:  5'- aGGUCGaccuCGGCCuCGACGGCGucGAGGu -3'
miRNA:   3'- -CUAGC----GCCGGcGUUGUCGCuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 47108 0.7 0.386087
Target:  5'- cGAUCGUguccuguGGCUGCAggccggccccggaGCAGCGGAgcGAGGGg -3'
miRNA:   3'- -CUAGCG-------CCGGCGU-------------UGUCGCUU--CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 11379 0.69 0.425156
Target:  5'- cGGUCGCGGCCGCcuGCgGGCGAGcAGc- -3'
miRNA:   3'- -CUAGCGCCGGCGu-UG-UCGCUUcUCcu -5'
26272 3' -56.4 NC_005345.2 + 31511 0.69 0.431894
Target:  5'- cGGUCGUgaccgaccGGCCGCGucucgacguccauuGCugggggucgAGCGAGGAGGAc -3'
miRNA:   3'- -CUAGCG--------CCGGCGU--------------UG---------UCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 1607 0.69 0.444571
Target:  5'- -cUUGCGGUCGCGuuCGGUGAuGAGGu -3'
miRNA:   3'- cuAGCGCCGGCGUu-GUCGCUuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 23974 0.68 0.454463
Target:  5'- uGUCGCGGCCGCGA-GGCu--GGGGc -3'
miRNA:   3'- cUAGCGCCGGCGUUgUCGcuuCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.