Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 207 | 0.68 | 0.464473 |
Target: 5'- cGAUucUGUGGCUGUc-CAGCGggGAGGc -3' miRNA: 3'- -CUA--GCGCCGGCGuuGUCGCuuCUCCu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 1607 | 0.69 | 0.444571 |
Target: 5'- -cUUGCGGUCGCGuuCGGUGAuGAGGu -3' miRNA: 3'- cuAGCGCCGGCGUu-GUCGCUuCUCCu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 2546 | 0.67 | 0.526748 |
Target: 5'- --aCGCGGUgGCGACGGCGAgugcccGGucGAc -3' miRNA: 3'- cuaGCGCCGgCGUUGUCGCU------UCucCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 2580 | 0.67 | 0.548216 |
Target: 5'- -cUCGgGGCCGaggcuGACGGCGA--GGGAu -3' miRNA: 3'- cuAGCgCCGGCg----UUGUCGCUucUCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 2661 | 0.68 | 0.464473 |
Target: 5'- -cUCGCGGCCGacuugauCGGCGAGGccgcGGGc -3' miRNA: 3'- cuAGCGCCGGCguu----GUCGCUUCu---CCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 3426 | 0.67 | 0.537445 |
Target: 5'- cGggCGCGGCgGCgGGCGGCGAuGcGGGc -3' miRNA: 3'- -CuaGCGCCGgCG-UUGUCGCUuCuCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 3702 | 0.68 | 0.495166 |
Target: 5'- cGUCuCGGCCGC--CGGCGgcGAGGu -3' miRNA: 3'- cUAGcGCCGGCGuuGUCGCuuCUCCu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 4915 | 0.67 | 0.563406 |
Target: 5'- --cUGCGGCUGCGuaggcgguugcccacACGGUGggG-GGAa -3' miRNA: 3'- cuaGCGCCGGCGU---------------UGUCGCuuCuCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 5935 | 0.67 | 0.515074 |
Target: 5'- gGGUCGCcguGGUCGUucucaggGACAGCGGcguGGGGAa -3' miRNA: 3'- -CUAGCG---CCGGCG-------UUGUCGCUu--CUCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 7459 | 0.68 | 0.474596 |
Target: 5'- gGAUCGUGaCCGCGGCAGCGAucGAc-- -3' miRNA: 3'- -CUAGCGCcGGCGUUGUCGCUu-CUccu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 7663 | 0.73 | 0.235727 |
Target: 5'- ---aGCGGCCGCu---GUGAAGGGGAg -3' miRNA: 3'- cuagCGCCGGCGuuguCGCUUCUCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 8525 | 0.73 | 0.261571 |
Target: 5'- -cUCGCcauGCCGCGGCucGCGGAGAGGu -3' miRNA: 3'- cuAGCGc--CGGCGUUGu-CGCUUCUCCu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 8842 | 0.74 | 0.217778 |
Target: 5'- --cCGCGGCUGCGgcACGGUGAAcGGGGGc -3' miRNA: 3'- cuaGCGCCGGCGU--UGUCGCUU-CUCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 9403 | 0.68 | 0.495166 |
Target: 5'- cGUCGaCGGCgCGUGGCAGCGggGucucgccgacGGAc -3' miRNA: 3'- cUAGC-GCCG-GCGUUGUCGCuuCu---------CCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 9812 | 0.67 | 0.537445 |
Target: 5'- uGUCGCGGCCGguGCcGcCGAugcccgaucAGGGGu -3' miRNA: 3'- cUAGCGCCGGCguUGuC-GCU---------UCUCCu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 10282 | 0.67 | 0.569951 |
Target: 5'- -cUCGCGGCCgGCGACAccggaccCGAGcGGGAa -3' miRNA: 3'- cuAGCGCCGG-CGUUGUc------GCUUcUCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 11379 | 0.69 | 0.425156 |
Target: 5'- cGGUCGCGGCCGCcuGCgGGCGAGcAGc- -3' miRNA: 3'- -CUAGCGCCGGCGu-UG-UCGCUUcUCcu -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 11610 | 0.72 | 0.29706 |
Target: 5'- ---gGCGGCCGCuggcgggaGugGGCGGAGAGcGAg -3' miRNA: 3'- cuagCGCCGGCG--------UugUCGCUUCUC-CU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 12368 | 0.71 | 0.320092 |
Target: 5'- --aCGgGGCCcgacGCcucGCAGCGGAGGGGAa -3' miRNA: 3'- cuaGCgCCGG----CGu--UGUCGCUUCUCCU- -5' |
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26272 | 3' | -56.4 | NC_005345.2 | + | 12751 | 0.67 | 0.559054 |
Target: 5'- uGAUCGCcacccGGCCGCGGCAGaCGuGGcgcgcguGGAc -3' miRNA: 3'- -CUAGCG-----CCGGCGUUGUC-GCuUCu------CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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