miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 48880 0.68 0.464473
Target:  5'- -uUCGcCGGCCGacguGGCGGCGAGGugcGGGc -3'
miRNA:   3'- cuAGC-GCCGGCg---UUGUCGCUUCu--CCU- -5'
26272 3' -56.4 NC_005345.2 + 48565 0.68 0.458453
Target:  5'- cGUCGCGGauGCGggcgccgaugagcucGCGGCGGGcGAGGAc -3'
miRNA:   3'- cUAGCGCCggCGU---------------UGUCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 47108 0.7 0.386087
Target:  5'- cGAUCGUguccuguGGCUGCAggccggccccggaGCAGCGGAgcGAGGGg -3'
miRNA:   3'- -CUAGCG-------CCGGCGU-------------UGUCGCUU--CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 45580 0.68 0.505602
Target:  5'- cGGUUGCGGCCgGgGGCcGCGAAcgggucGAGGGu -3'
miRNA:   3'- -CUAGCGCCGG-CgUUGuCGCUU------CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 45459 0.68 0.505602
Target:  5'- ---gGCGGCCGaGACGGCGGccGGGGu -3'
miRNA:   3'- cuagCGCCGGCgUUGUCGCUucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 43499 0.67 0.548216
Target:  5'- cGAUCGCcgccaaGGUCGCGGCGaacccggcgcucGCGGAGcGGAu -3'
miRNA:   3'- -CUAGCG------CCGGCGUUGU------------CGCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 43241 0.66 0.613969
Target:  5'- uGUCGUGGcCCGCAuucauCAcCGAccaGGAGGAc -3'
miRNA:   3'- cUAGCGCC-GGCGUu----GUcGCU---UCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 41107 0.66 0.602917
Target:  5'- --aCGCgGGCCGCAGCAcgcccGCGGuacGGGGc -3'
miRNA:   3'- cuaGCG-CCGGCGUUGU-----CGCUu--CUCCu -5'
26272 3' -56.4 NC_005345.2 + 40627 0.68 0.474596
Target:  5'- --cCGCGaGCCGCGGCauGGCGAGcaAGGAc -3'
miRNA:   3'- cuaGCGC-CGGCGUUG--UCGCUUc-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 40486 0.7 0.361391
Target:  5'- --cCGCGGCgaGCAgcagcACGGCGAGGuAGGGa -3'
miRNA:   3'- cuaGCGCCGg-CGU-----UGUCGCUUC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 40229 0.68 0.474596
Target:  5'- cGGggGCGGCCGCcguGAUccuGGCGAGcGGGGAc -3'
miRNA:   3'- -CUagCGCCGGCG---UUG---UCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 39757 0.76 0.148836
Target:  5'- --aCGCGccGUCGaCGACGGCGAGGAGGAg -3'
miRNA:   3'- cuaGCGC--CGGC-GUUGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 37913 0.68 0.474596
Target:  5'- -uUCGCgGGCUGCGGCAGCGcGGGc-- -3'
miRNA:   3'- cuAGCG-CCGGCGUUGUCGCuUCUccu -5'
26272 3' -56.4 NC_005345.2 + 36567 1.09 0.000673
Target:  5'- cGAUCGCGGCCGCAACAGCGAAGAGGAc -3'
miRNA:   3'- -CUAGCGCCGGCGUUGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 36389 0.67 0.516131
Target:  5'- --cCGCGGCCGCGGC-GUGu--GGGAc -3'
miRNA:   3'- cuaGCGCCGGCGUUGuCGCuucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 36251 0.72 0.268382
Target:  5'- ---gGCGGCCGUcGCGGCGAucGAGGc -3'
miRNA:   3'- cuagCGCCGGCGuUGUCGCUu-CUCCu -5'
26272 3' -56.4 NC_005345.2 + 35468 0.68 0.464473
Target:  5'- cGAggGCGaGCUGCccGACGGCGucGAGGGc -3'
miRNA:   3'- -CUagCGC-CGGCG--UUGUCGCuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 34754 0.67 0.548216
Target:  5'- -cUCGCGGCgGCGGCGGUGAc----- -3'
miRNA:   3'- cuAGCGCCGgCGUUGUCGCUucuccu -5'
26272 3' -56.4 NC_005345.2 + 34143 0.68 0.464473
Target:  5'- aGAUCGaguGG-CGCGGCGGCGGccccGAGGAg -3'
miRNA:   3'- -CUAGCg--CCgGCGUUGUCGCUu---CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 33336 0.66 0.625036
Target:  5'- --cCGuCGGCCGgAgucgccgagaGCGGCGcGAGAGGGg -3'
miRNA:   3'- cuaGC-GCCGGCgU----------UGUCGC-UUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.