miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 39757 0.76 0.148836
Target:  5'- --aCGCGccGUCGaCGACGGCGAGGAGGAg -3'
miRNA:   3'- cuaGCGC--CGGC-GUUGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 30252 0.67 0.526748
Target:  5'- uGAUCGCGGCCGCcgAGCAG-GccGGGc- -3'
miRNA:   3'- -CUAGCGCCGGCG--UUGUCgCuuCUCcu -5'
26272 3' -56.4 NC_005345.2 + 9812 0.67 0.537445
Target:  5'- uGUCGCGGCCGguGCcGcCGAugcccgaucAGGGGu -3'
miRNA:   3'- cUAGCGCCGGCguUGuC-GCU---------UCUCCu -5'
26272 3' -56.4 NC_005345.2 + 22680 0.66 0.613969
Target:  5'- aGUCGCucGUCGUGGCGGUGAAGcGGGg -3'
miRNA:   3'- cUAGCGc-CGGCGUUGUCGCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 12368 0.71 0.320092
Target:  5'- --aCGgGGCCcgacGCcucGCAGCGGAGGGGAa -3'
miRNA:   3'- cuaGCgCCGG----CGu--UGUCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 14931 0.7 0.361391
Target:  5'- ---gGCGGCUGCAgcggGCGGCGgcGaAGGAu -3'
miRNA:   3'- cuagCGCCGGCGU----UGUCGCuuC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 47108 0.7 0.386087
Target:  5'- cGAUCGUguccuguGGCUGCAggccggccccggaGCAGCGGAgcGAGGGg -3'
miRNA:   3'- -CUAGCG-------CCGGCGU-------------UGUCGCUU--CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 11379 0.69 0.425156
Target:  5'- cGGUCGCGGCCGCcuGCgGGCGAGcAGc- -3'
miRNA:   3'- -CUAGCGCCGGCGu-UG-UCGCUUcUCcu -5'
26272 3' -56.4 NC_005345.2 + 48565 0.68 0.458453
Target:  5'- cGUCGCGGauGCGggcgccgaugagcucGCGGCGGGcGAGGAc -3'
miRNA:   3'- cUAGCGCCggCGU---------------UGUCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 36389 0.67 0.516131
Target:  5'- --cCGCGGCCGCGGC-GUGu--GGGAc -3'
miRNA:   3'- cuaGCGCCGGCGUUGuCGCuucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 7459 0.68 0.474596
Target:  5'- gGAUCGUGaCCGCGGCAGCGAucGAc-- -3'
miRNA:   3'- -CUAGCGCcGGCGUUGUCGCUu-CUccu -5'
26272 3' -56.4 NC_005345.2 + 23974 0.68 0.454463
Target:  5'- uGUCGCGGCCGCGA-GGCu--GGGGc -3'
miRNA:   3'- cUAGCGCCGGCGUUgUCGcuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 8842 0.74 0.217778
Target:  5'- --cCGCGGCUGCGgcACGGUGAAcGGGGGc -3'
miRNA:   3'- cuaGCGCCGGCGU--UGUCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 40627 0.68 0.474596
Target:  5'- --cCGCGaGCCGCGGCauGGCGAGcaAGGAc -3'
miRNA:   3'- cuaGCGC-CGGCGUUG--UCGCUUc-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 11610 0.72 0.29706
Target:  5'- ---gGCGGCCGCuggcgggaGugGGCGGAGAGcGAg -3'
miRNA:   3'- cuagCGCCGGCG--------UugUCGCUUCUC-CU- -5'
26272 3' -56.4 NC_005345.2 + 31511 0.69 0.431894
Target:  5'- cGGUCGUgaccgaccGGCCGCGucucgacguccauuGCugggggucgAGCGAGGAGGAc -3'
miRNA:   3'- -CUAGCG--------CCGGCGU--------------UG---------UCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 3702 0.68 0.495166
Target:  5'- cGUCuCGGCCGC--CGGCGgcGAGGu -3'
miRNA:   3'- cUAGcGCCGGCGuuGUCGCuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 30310 0.67 0.526748
Target:  5'- cGGUgGCGGCguaCGCAACGGUc--GAGGAc -3'
miRNA:   3'- -CUAgCGCCG---GCGUUGUCGcuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 28400 0.71 0.312269
Target:  5'- --cCGCGGCgGCAGCGGC-AGGcAGGGc -3'
miRNA:   3'- cuaGCGCCGgCGUUGUCGcUUC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 15644 0.7 0.370084
Target:  5'- cGGUCGgGGCCGCAAU-GCGAccGGGc -3'
miRNA:   3'- -CUAGCgCCGGCGUUGuCGCUucUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.