Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 207 | 0.68 | 0.464473 |
Target: 5'- cGAUucUGUGGCUGUc-CAGCGggGAGGc -3' miRNA: 3'- -CUA--GCGCCGGCGuuGUCGCuuCUCCu -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 45459 | 0.68 | 0.505602 |
Target: 5'- ---gGCGGCCGaGACGGCGGccGGGGu -3' miRNA: 3'- cuagCGCCGGCgUUGUCGCUucUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 9403 | 0.68 | 0.495166 |
Target: 5'- cGUCGaCGGCgCGUGGCAGCGggGucucgccgacGGAc -3' miRNA: 3'- cUAGC-GCCG-GCGUUGUCGCuuCu---------CCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 18210 | 0.68 | 0.474596 |
Target: 5'- cGGUCGCGGCCGUGcACcGUGAGcGGGc -3' miRNA: 3'- -CUAGCGCCGGCGU-UGuCGCUUcUCCu -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 40229 | 0.68 | 0.474596 |
Target: 5'- cGGggGCGGCCGCcguGAUccuGGCGAGcGGGGAc -3' miRNA: 3'- -CUagCGCCGGCG---UUG---UCGCUU-CUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 37913 | 0.68 | 0.474596 |
Target: 5'- -uUCGCgGGCUGCGGCAGCGcGGGc-- -3' miRNA: 3'- cuAGCG-CCGGCGUUGUCGCuUCUccu -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 35468 | 0.68 | 0.464473 |
Target: 5'- cGAggGCGaGCUGCccGACGGCGucGAGGGc -3' miRNA: 3'- -CUagCGC-CGGCG--UUGUCGCuuCUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 34143 | 0.68 | 0.464473 |
Target: 5'- aGAUCGaguGG-CGCGGCGGCGGccccGAGGAg -3' miRNA: 3'- -CUAGCg--CCgGCGUUGUCGCUu---CUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 2661 | 0.68 | 0.464473 |
Target: 5'- -cUCGCGGCCGacuugauCGGCGAGGccgcGGGc -3' miRNA: 3'- cuAGCGCCGGCguu----GUCGCUUCu---CCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 45580 | 0.68 | 0.505602 |
Target: 5'- cGGUUGCGGCCgGgGGCcGCGAAcgggucGAGGGu -3' miRNA: 3'- -CUAGCGCCGG-CgUUGuCGCUU------CUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 5935 | 0.67 | 0.515074 |
Target: 5'- gGGUCGCcguGGUCGUucucaggGACAGCGGcguGGGGAa -3' miRNA: 3'- -CUAGCG---CCGGCG-------UUGUCGCUu--CUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 2546 | 0.67 | 0.526748 |
Target: 5'- --aCGCGGUgGCGACGGCGAgugcccGGucGAc -3' miRNA: 3'- cuaGCGCCGgCGUUGUCGCU------UCucCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 31268 | 0.66 | 0.613969 |
Target: 5'- gGGUgCGCGGgUGCGGgGGCGGgugcgcgccacgGGGGGAu -3' miRNA: 3'- -CUA-GCGCCgGCGUUgUCGCU------------UCUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 18926 | 0.66 | 0.602917 |
Target: 5'- -cUCGCGGCuCGCGucggcgucgACguugaucucguGGCGgcGAGGAa -3' miRNA: 3'- cuAGCGCCG-GCGU---------UG-----------UCGCuuCUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 16637 | 0.66 | 0.602917 |
Target: 5'- aGAUCG-GGCCGCccgcCGGC--AGAGGGa -3' miRNA: 3'- -CUAGCgCCGGCGuu--GUCGcuUCUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 18045 | 0.66 | 0.602917 |
Target: 5'- --aCGCGGCCaCGuuGCGGCGGguGGuGGAc -3' miRNA: 3'- cuaGCGCCGGcGU--UGUCGCU--UCuCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 10282 | 0.67 | 0.569951 |
Target: 5'- -cUCGCGGCCgGCGACAccggaccCGAGcGGGAa -3' miRNA: 3'- cuAGCGCCGG-CGUUGUc------GCUUcUCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 4915 | 0.67 | 0.563406 |
Target: 5'- --cUGCGGCUGCGuaggcgguugcccacACGGUGggG-GGAa -3' miRNA: 3'- cuaGCGCCGGCGU---------------UGUCGCuuCuCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 3426 | 0.67 | 0.537445 |
Target: 5'- cGggCGCGGCgGCgGGCGGCGAuGcGGGc -3' miRNA: 3'- -CuaGCGCCGgCG-UUGUCGCUuCuCCU- -5' |
|||||||
26272 | 3' | -56.4 | NC_005345.2 | + | 2580 | 0.67 | 0.548216 |
Target: 5'- -cUCGgGGCCGaggcuGACGGCGA--GGGAu -3' miRNA: 3'- cuAGCgCCGGCg----UUGUCGCUucUCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home