miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 7459 0.68 0.474596
Target:  5'- gGAUCGUGaCCGCGGCAGCGAucGAc-- -3'
miRNA:   3'- -CUAGCGCcGGCGUUGUCGCUu-CUccu -5'
26272 3' -56.4 NC_005345.2 + 25112 0.66 0.602917
Target:  5'- --cCGCGGCUGCA--GGUGAAGGugacgcGGAa -3'
miRNA:   3'- cuaGCGCCGGCGUugUCGCUUCU------CCU- -5'
26272 3' -56.4 NC_005345.2 + 9812 0.67 0.537445
Target:  5'- uGUCGCGGCCGguGCcGcCGAugcccgaucAGGGGu -3'
miRNA:   3'- cUAGCGCCGGCguUGuC-GCU---------UCUCCu -5'
26272 3' -56.4 NC_005345.2 + 29504 0.68 0.464473
Target:  5'- cGAagGCGGCCGUgucgcacaugcGGCAGUGc-GAGGAa -3'
miRNA:   3'- -CUagCGCCGGCG-----------UUGUCGCuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 23594 0.66 0.5809
Target:  5'- gGGUCGCGGCguucggCGCGACgccGGCGGAccGGGc -3'
miRNA:   3'- -CUAGCGCCG------GCGUUG---UCGCUUcuCCU- -5'
26272 3' -56.4 NC_005345.2 + 30836 0.66 0.613969
Target:  5'- --gCGUGGCUGCAGCAgaacacuggccGCGAGGAc-- -3'
miRNA:   3'- cuaGCGCCGGCGUUGU-----------CGCUUCUccu -5'
26272 3' -56.4 NC_005345.2 + 41107 0.66 0.602917
Target:  5'- --aCGCgGGCCGCAGCAcgcccGCGGuacGGGGc -3'
miRNA:   3'- cuaGCG-CCGGCGUUGU-----CGCUu--CUCCu -5'
26272 3' -56.4 NC_005345.2 + 48565 0.68 0.458453
Target:  5'- cGUCGCGGauGCGggcgccgaugagcucGCGGCGGGcGAGGAc -3'
miRNA:   3'- cUAGCGCCggCGU---------------UGUCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 23974 0.68 0.454463
Target:  5'- uGUCGCGGCCGCGA-GGCu--GGGGc -3'
miRNA:   3'- cUAGCGCCGGCGUUgUCGcuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 40627 0.68 0.474596
Target:  5'- --cCGCGaGCCGCGGCauGGCGAGcaAGGAc -3'
miRNA:   3'- cuaGCGC-CGGCGUUG--UCGCUUc-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 36389 0.67 0.516131
Target:  5'- --cCGCGGCCGCGGC-GUGu--GGGAc -3'
miRNA:   3'- cuaGCGCCGGCGUUGuCGCuucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 4915 0.67 0.563406
Target:  5'- --cUGCGGCUGCGuaggcgguugcccacACGGUGggG-GGAa -3'
miRNA:   3'- cuaGCGCCGGCGU---------------UGUCGCuuCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 29907 0.75 0.185377
Target:  5'- cGGUCGCGGUCGCcgagcaccucgAAgAGCaGggGAGGAc -3'
miRNA:   3'- -CUAGCGCCGGCG-----------UUgUCG-CuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 25184 0.73 0.235727
Target:  5'- -cUCGCGGCCGCGACAGCa------- -3'
miRNA:   3'- cuAGCGCCGGCGUUGUCGcuucuccu -5'
26272 3' -56.4 NC_005345.2 + 7663 0.73 0.235727
Target:  5'- ---aGCGGCCGCu---GUGAAGGGGAg -3'
miRNA:   3'- cuagCGCCGGCGuuguCGCUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 8525 0.73 0.261571
Target:  5'- -cUCGCcauGCCGCGGCucGCGGAGAGGu -3'
miRNA:   3'- cuAGCGc--CGGCGUUGu-CGCUUCUCCu -5'
26272 3' -56.4 NC_005345.2 + 36251 0.72 0.268382
Target:  5'- ---gGCGGCCGUcGCGGCGAucGAGGc -3'
miRNA:   3'- cuagCGCCGGCGuUGUCGCUu-CUCCu -5'
26272 3' -56.4 NC_005345.2 + 45459 0.68 0.505602
Target:  5'- ---gGCGGCCGaGACGGCGGccGGGGu -3'
miRNA:   3'- cuagCGCCGGCgUUGUCGCUucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 9403 0.68 0.495166
Target:  5'- cGUCGaCGGCgCGUGGCAGCGggGucucgccgacGGAc -3'
miRNA:   3'- cUAGC-GCCG-GCGUUGUCGCuuCu---------CCU- -5'
26272 3' -56.4 NC_005345.2 + 18210 0.68 0.474596
Target:  5'- cGGUCGCGGCCGUGcACcGUGAGcGGGc -3'
miRNA:   3'- -CUAGCGCCGGCGU-UGuCGCUUcUCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.