miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 14931 0.7 0.361391
Target:  5'- ---gGCGGCUGCAgcggGCGGCGgcGaAGGAu -3'
miRNA:   3'- cuagCGCCGGCGU----UGUCGCuuC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 15644 0.7 0.370084
Target:  5'- cGGUCGgGGCCGCAAU-GCGAccGGGc -3'
miRNA:   3'- -CUAGCgCCGGCGUUGuCGCUucUCCu -5'
26272 3' -56.4 NC_005345.2 + 16479 0.7 0.378918
Target:  5'- aGGUCGaccuCGGCCuCGACGGCGucGAGGu -3'
miRNA:   3'- -CUAGC----GCCGGcGUUGUCGCuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 16637 0.66 0.602917
Target:  5'- aGAUCG-GGCCGCccgcCGGC--AGAGGGa -3'
miRNA:   3'- -CUAGCgCCGGCGuu--GUCGcuUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 18045 0.66 0.602917
Target:  5'- --aCGCGGCCaCGuuGCGGCGGguGGuGGAc -3'
miRNA:   3'- cuaGCGCCGGcGU--UGUCGCU--UCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 18210 0.68 0.474596
Target:  5'- cGGUCGCGGCCGUGcACcGUGAGcGGGc -3'
miRNA:   3'- -CUAGCGCCGGCGU-UGuCGCUUcUCCu -5'
26272 3' -56.4 NC_005345.2 + 18655 0.66 0.602917
Target:  5'- gGGUCGCuGUC-CGGCAGCcucaccGAAGAGGGu -3'
miRNA:   3'- -CUAGCGcCGGcGUUGUCG------CUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 18926 0.66 0.602917
Target:  5'- -cUCGCGGCuCGCGucggcgucgACguugaucucguGGCGgcGAGGAa -3'
miRNA:   3'- cuAGCGCCG-GCGU---------UG-----------UCGCuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 21535 0.66 0.591891
Target:  5'- --aUGCGGUgaagaGCAGCAGgGAAG-GGAa -3'
miRNA:   3'- cuaGCGCCGg----CGUUGUCgCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 22680 0.66 0.613969
Target:  5'- aGUCGCucGUCGUGGCGGUGAAGcGGGg -3'
miRNA:   3'- cUAGCGc-CGGCGUUGUCGCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 23594 0.66 0.5809
Target:  5'- gGGUCGCGGCguucggCGCGACgccGGCGGAccGGGc -3'
miRNA:   3'- -CUAGCGCCG------GCGUUG---UCGCUUcuCCU- -5'
26272 3' -56.4 NC_005345.2 + 23974 0.68 0.454463
Target:  5'- uGUCGCGGCCGCGA-GGCu--GGGGc -3'
miRNA:   3'- cUAGCGCCGGCGUUgUCGcuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 25112 0.66 0.602917
Target:  5'- --cCGCGGCUGCA--GGUGAAGGugacgcGGAa -3'
miRNA:   3'- cuaGCGCCGGCGUugUCGCUUCU------CCU- -5'
26272 3' -56.4 NC_005345.2 + 25184 0.73 0.235727
Target:  5'- -cUCGCGGCCGCGACAGCa------- -3'
miRNA:   3'- cuAGCGCCGGCGUUGUCGcuucuccu -5'
26272 3' -56.4 NC_005345.2 + 28400 0.71 0.312269
Target:  5'- --cCGCGGCgGCAGCGGC-AGGcAGGGc -3'
miRNA:   3'- cuaGCGCCGgCGUUGUCGcUUC-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 29504 0.68 0.464473
Target:  5'- cGAagGCGGCCGUgucgcacaugcGGCAGUGc-GAGGAa -3'
miRNA:   3'- -CUagCGCCGGCG-----------UUGUCGCuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 29907 0.75 0.185377
Target:  5'- cGGUCGCGGUCGCcgagcaccucgAAgAGCaGggGAGGAc -3'
miRNA:   3'- -CUAGCGCCGGCG-----------UUgUCG-CuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 30252 0.67 0.526748
Target:  5'- uGAUCGCGGCCGCcgAGCAG-GccGGGc- -3'
miRNA:   3'- -CUAGCGCCGGCG--UUGUCgCuuCUCcu -5'
26272 3' -56.4 NC_005345.2 + 30310 0.67 0.526748
Target:  5'- cGGUgGCGGCguaCGCAACGGUc--GAGGAc -3'
miRNA:   3'- -CUAgCGCCG---GCGUUGUCGcuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 30836 0.66 0.613969
Target:  5'- --gCGUGGCUGCAGCAgaacacuggccGCGAGGAc-- -3'
miRNA:   3'- cuaGCGCCGGCGUUGU-----------CGCUUCUccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.