miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 9812 0.67 0.537445
Target:  5'- uGUCGCGGCCGguGCcGcCGAugcccgaucAGGGGu -3'
miRNA:   3'- cUAGCGCCGGCguUGuC-GCU---------UCUCCu -5'
26272 3' -56.4 NC_005345.2 + 30310 0.67 0.526748
Target:  5'- cGGUgGCGGCguaCGCAACGGUc--GAGGAc -3'
miRNA:   3'- -CUAgCGCCG---GCGUUGUCGcuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 2546 0.67 0.526748
Target:  5'- --aCGCGGUgGCGACGGCGAgugcccGGucGAc -3'
miRNA:   3'- cuaGCGCCGgCGUUGUCGCU------UCucCU- -5'
26272 3' -56.4 NC_005345.2 + 30252 0.67 0.526748
Target:  5'- uGAUCGCGGCCGCcgAGCAG-GccGGGc- -3'
miRNA:   3'- -CUAGCGCCGGCG--UUGUCgCuuCUCcu -5'
26272 3' -56.4 NC_005345.2 + 36389 0.67 0.516131
Target:  5'- --cCGCGGCCGCGGC-GUGu--GGGAc -3'
miRNA:   3'- cuaGCGCCGGCGUUGuCGCuucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 5935 0.67 0.515074
Target:  5'- gGGUCGCcguGGUCGUucucaggGACAGCGGcguGGGGAa -3'
miRNA:   3'- -CUAGCG---CCGGCG-------UUGUCGCUu--CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 45459 0.68 0.505602
Target:  5'- ---gGCGGCCGaGACGGCGGccGGGGu -3'
miRNA:   3'- cuagCGCCGGCgUUGUCGCUucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 45580 0.68 0.505602
Target:  5'- cGGUUGCGGCCgGgGGCcGCGAAcgggucGAGGGu -3'
miRNA:   3'- -CUAGCGCCGG-CgUUGuCGCUU------CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 9403 0.68 0.495166
Target:  5'- cGUCGaCGGCgCGUGGCAGCGggGucucgccgacGGAc -3'
miRNA:   3'- cUAGC-GCCG-GCGUUGUCGCuuCu---------CCU- -5'
26272 3' -56.4 NC_005345.2 + 3702 0.68 0.495166
Target:  5'- cGUCuCGGCCGC--CGGCGgcGAGGu -3'
miRNA:   3'- cUAGcGCCGGCGuuGUCGCuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 40229 0.68 0.474596
Target:  5'- cGGggGCGGCCGCcguGAUccuGGCGAGcGGGGAc -3'
miRNA:   3'- -CUagCGCCGGCG---UUG---UCGCUU-CUCCU- -5'
26272 3' -56.4 NC_005345.2 + 7459 0.68 0.474596
Target:  5'- gGAUCGUGaCCGCGGCAGCGAucGAc-- -3'
miRNA:   3'- -CUAGCGCcGGCGUUGUCGCUu-CUccu -5'
26272 3' -56.4 NC_005345.2 + 40627 0.68 0.474596
Target:  5'- --cCGCGaGCCGCGGCauGGCGAGcaAGGAc -3'
miRNA:   3'- cuaGCGC-CGGCGUUG--UCGCUUc-UCCU- -5'
26272 3' -56.4 NC_005345.2 + 37913 0.68 0.474596
Target:  5'- -uUCGCgGGCUGCGGCAGCGcGGGc-- -3'
miRNA:   3'- cuAGCG-CCGGCGUUGUCGCuUCUccu -5'
26272 3' -56.4 NC_005345.2 + 18210 0.68 0.474596
Target:  5'- cGGUCGCGGCCGUGcACcGUGAGcGGGc -3'
miRNA:   3'- -CUAGCGCCGGCGU-UGuCGCUUcUCCu -5'
26272 3' -56.4 NC_005345.2 + 29504 0.68 0.464473
Target:  5'- cGAagGCGGCCGUgucgcacaugcGGCAGUGc-GAGGAa -3'
miRNA:   3'- -CUagCGCCGGCG-----------UUGUCGCuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 207 0.68 0.464473
Target:  5'- cGAUucUGUGGCUGUc-CAGCGggGAGGc -3'
miRNA:   3'- -CUA--GCGCCGGCGuuGUCGCuuCUCCu -5'
26272 3' -56.4 NC_005345.2 + 48880 0.68 0.464473
Target:  5'- -uUCGcCGGCCGacguGGCGGCGAGGugcGGGc -3'
miRNA:   3'- cuAGC-GCCGGCg---UUGUCGCUUCu--CCU- -5'
26272 3' -56.4 NC_005345.2 + 2661 0.68 0.464473
Target:  5'- -cUCGCGGCCGacuugauCGGCGAGGccgcGGGc -3'
miRNA:   3'- cuAGCGCCGGCguu----GUCGCUUCu---CCU- -5'
26272 3' -56.4 NC_005345.2 + 34143 0.68 0.464473
Target:  5'- aGAUCGaguGG-CGCGGCGGCGGccccGAGGAg -3'
miRNA:   3'- -CUAGCg--CCgGCGUUGUCGCUu---CUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.