miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26274 3' -61.3 NC_005345.2 + 33504 1.11 0.000238
Target:  5'- gCCCGGUCGCAUUGCGGCCCCGACCGGu -3'
miRNA:   3'- -GGGCCAGCGUAACGCCGGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 30243 0.79 0.060271
Target:  5'- gCCGGUCGaCGacggUGCGGgUCCGGCCGGu -3'
miRNA:   3'- gGGCCAGC-GUa---ACGCCgGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 6372 0.77 0.081219
Target:  5'- gCCgCGGUgGCGUUGCGGUCCCaugugauGugCGGa -3'
miRNA:   3'- -GG-GCCAgCGUAACGCCGGGG-------CugGCC- -5'
26274 3' -61.3 NC_005345.2 + 45146 0.76 0.095817
Target:  5'- aCgCGGaCGCGcUGCGGCUcguCCGACCGGg -3'
miRNA:   3'- -GgGCCaGCGUaACGCCGG---GGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 14370 0.75 0.1096
Target:  5'- aCCCGG-CGCAgcuCGGCgaCCGGCCGGu -3'
miRNA:   3'- -GGGCCaGCGUaacGCCGg-GGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 39552 0.75 0.1096
Target:  5'- aCCGGcccCGCGgc-CGGUCCCGGCCGGu -3'
miRNA:   3'- gGGCCa--GCGUaacGCCGGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 18207 0.75 0.112572
Target:  5'- aCCCGGUCGCGgccgUGCaccgugagcgGGCCgCCGgcggucgucACCGGg -3'
miRNA:   3'- -GGGCCAGCGUa---ACG----------CCGG-GGC---------UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 43851 0.75 0.118742
Target:  5'- gCCCGGUCGac--GgGGCgUCGGCCGGg -3'
miRNA:   3'- -GGGCCAGCguaaCgCCGgGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 46521 0.74 0.132036
Target:  5'- cCUCGGUacCGCGUU-CGGCCCCGACUc- -3'
miRNA:   3'- -GGGCCA--GCGUAAcGCCGGGGCUGGcc -5'
26274 3' -61.3 NC_005345.2 + 46022 0.74 0.139187
Target:  5'- cUCCGGUCGgaCGggGCGGCCCCucgguauguCCGGg -3'
miRNA:   3'- -GGGCCAGC--GUaaCGCCGGGGcu-------GGCC- -5'
26274 3' -61.3 NC_005345.2 + 3067 0.73 0.142894
Target:  5'- gUCCG--CGCAggccccgGCGGCCCCGGCCGc -3'
miRNA:   3'- -GGGCcaGCGUaa-----CGCCGGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 48369 0.73 0.146691
Target:  5'- gCCCGGUCgGCAUcccCcGCCgCCGGCCGGg -3'
miRNA:   3'- -GGGCCAG-CGUAac-GcCGG-GGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 7336 0.73 0.154562
Target:  5'- gCCGaGUCGCAcgcggUGUGGCCCgCGguggcgcaGCCGGg -3'
miRNA:   3'- gGGC-CAGCGUa----ACGCCGGG-GC--------UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 43497 0.73 0.154562
Target:  5'- gUCCGGgccCGCcggGCGGUgCCGAUCGGg -3'
miRNA:   3'- -GGGCCa--GCGuaaCGCCGgGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 7032 0.73 0.162393
Target:  5'- gCCGGUCGaccggccggcgauCGagGCGG-CCCGGCCGGa -3'
miRNA:   3'- gGGCCAGC-------------GUaaCGCCgGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 37770 0.73 0.162815
Target:  5'- gCUCGccCGCAg-GCGGCCgCGACCGGg -3'
miRNA:   3'- -GGGCcaGCGUaaCGCCGGgGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 20462 0.73 0.162815
Target:  5'- gCCCGaGuagccaacgccUCGCc-UGUGGCCCCGACCGu -3'
miRNA:   3'- -GGGC-C-----------AGCGuaACGCCGGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 34150 0.72 0.167088
Target:  5'- -gUGG-CGCGgcgGCGGCCCCGAggaguggcCCGGg -3'
miRNA:   3'- ggGCCaGCGUaa-CGCCGGGGCU--------GGCC- -5'
26274 3' -61.3 NC_005345.2 + 27118 0.72 0.167088
Target:  5'- gCUCGG-CGCcacgGCGGCaCCGGCCGGc -3'
miRNA:   3'- -GGGCCaGCGuaa-CGCCGgGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 11596 0.72 0.167088
Target:  5'- uCgCGGUgGCGUgggGCGGCCgCUGGCgGGa -3'
miRNA:   3'- -GgGCCAgCGUAa--CGCCGG-GGCUGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.