miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26274 3' -61.3 NC_005345.2 + 317 0.68 0.332899
Target:  5'- cCCCGGaagggGCGggGCGGCUCCgcucuGACCGa -3'
miRNA:   3'- -GGGCCag---CGUaaCGCCGGGG-----CUGGCc -5'
26274 3' -61.3 NC_005345.2 + 748 0.71 0.221074
Target:  5'- gCCGcUCGCggUGCucgugggauaGCCCCGGCCGGc -3'
miRNA:   3'- gGGCcAGCGuaACGc---------CGGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 2070 0.7 0.238183
Target:  5'- aCCUGGUCGgAaccgaugUGCaggauuGUCCCGGCCGGg -3'
miRNA:   3'- -GGGCCAGCgUa------ACGc-----CGGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 2369 0.66 0.407057
Target:  5'- gCCCGGUCGCGaccucGCGGgCCCaa--GGg -3'
miRNA:   3'- -GGGCCAGCGUaa---CGCCgGGGcuggCC- -5'
26274 3' -61.3 NC_005345.2 + 2545 0.69 0.296188
Target:  5'- aCCCGG-CGC----CGGCCCCGAUCc- -3'
miRNA:   3'- -GGGCCaGCGuaacGCCGGGGCUGGcc -5'
26274 3' -61.3 NC_005345.2 + 2566 0.67 0.364596
Target:  5'- gCCCGGUCGaCGUgcucGgGGCCgaGGCUGa -3'
miRNA:   3'- -GGGCCAGC-GUAa---CgCCGGggCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 3067 0.73 0.142894
Target:  5'- gUCCG--CGCAggccccgGCGGCCCCGGCCGc -3'
miRNA:   3'- -GGGCcaGCGUaa-----CGCCGGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 3579 0.72 0.167088
Target:  5'- cCCCGGcCGCAaccgGCccGCCCCGACCu- -3'
miRNA:   3'- -GGGCCaGCGUaa--CGc-CGGGGCUGGcc -5'
26274 3' -61.3 NC_005345.2 + 3643 0.66 0.433977
Target:  5'- gCCGucCGCAgcccgGCGGCagCGGCCGGg -3'
miRNA:   3'- gGGCcaGCGUaa---CGCCGggGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 3692 0.66 0.407057
Target:  5'- cCCCGGcCGCcgUcuCGGCCgCCGGCgGc -3'
miRNA:   3'- -GGGCCaGCGuaAc-GCCGG-GGCUGgCc -5'
26274 3' -61.3 NC_005345.2 + 3839 0.66 0.415914
Target:  5'- --aGGUCgGCGgcgUGCGGaCCCGGCUGa -3'
miRNA:   3'- gggCCAG-CGUa--ACGCCgGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 4447 0.67 0.356479
Target:  5'- --aGGUCGUGUggaGGCUCCGGCgGGg -3'
miRNA:   3'- gggCCAGCGUAacgCCGGGGCUGgCC- -5'
26274 3' -61.3 NC_005345.2 + 4921 0.67 0.372839
Target:  5'- -gCGGcagcCGCAcgUGC-GCUCCGGCCGGg -3'
miRNA:   3'- ggGCCa---GCGUa-ACGcCGGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 5991 0.72 0.171461
Target:  5'- uCCCaGuucuUCGCGUUGCGGgugcaguuCUCCGGCCGGc -3'
miRNA:   3'- -GGGcC----AGCGUAACGCC--------GGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 6148 0.72 0.184727
Target:  5'- aCCCGGUCGCAccgGCucaucgaGGUCCCcuCCGGc -3'
miRNA:   3'- -GGGCCAGCGUaa-CG-------CCGGGGcuGGCC- -5'
26274 3' -61.3 NC_005345.2 + 6182 0.67 0.364596
Target:  5'- gCCCGGcgcaguuccgCGCGUUccGCGGCgCCCuGGCCa- -3'
miRNA:   3'- -GGGCCa---------GCGUAA--CGCCG-GGG-CUGGcc -5'
26274 3' -61.3 NC_005345.2 + 6274 0.68 0.34063
Target:  5'- aCgGGUCccacaGCAcgUGCGGggccgccuucaUCCCGGCCGGg -3'
miRNA:   3'- gGgCCAG-----CGUa-ACGCC-----------GGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 6372 0.77 0.081219
Target:  5'- gCCgCGGUgGCGUUGCGGUCCCaugugauGugCGGa -3'
miRNA:   3'- -GG-GCCAgCGUAACGCCGGGG-------CugGCC- -5'
26274 3' -61.3 NC_005345.2 + 6942 0.7 0.244128
Target:  5'- uCCCGGUCGuCAUgGUGGUgCCGGCg-- -3'
miRNA:   3'- -GGGCCAGC-GUAaCGCCGgGGCUGgcc -5'
26274 3' -61.3 NC_005345.2 + 7032 0.73 0.162393
Target:  5'- gCCGGUCGaccggccggcgauCGagGCGG-CCCGGCCGGa -3'
miRNA:   3'- gGGCCAGC-------------GUaaCGCCgGGGCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.