Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26274 | 3' | -61.3 | NC_005345.2 | + | 45146 | 0.76 | 0.095817 |
Target: 5'- aCgCGGaCGCGcUGCGGCUcguCCGACCGGg -3' miRNA: 3'- -GgGCCaGCGUaACGCCGG---GGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 37888 | 0.71 | 0.221074 |
Target: 5'- -aCGGUCGCg--GCGGUgCCCGucacgGCCGGa -3' miRNA: 3'- ggGCCAGCGuaaCGCCG-GGGC-----UGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 47935 | 0.7 | 0.226657 |
Target: 5'- aCCCGuaccgCGCGgcGUGGCCCgCGgGCCGGa -3' miRNA: 3'- -GGGCca---GCGUaaCGCCGGG-GC-UGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 33444 | 0.66 | 0.45624 |
Target: 5'- gCCCGGggauUCGCcgaggaccugcaGCGGCagaUCGGCCGGc -3' miRNA: 3'- -GGGCC----AGCGuaa---------CGCCGg--GGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 3067 | 0.73 | 0.142894 |
Target: 5'- gUCCG--CGCAggccccgGCGGCCCCGGCCGc -3' miRNA: 3'- -GGGCcaGCGUaa-----CGCCGGGGCUGGCc -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 48369 | 0.73 | 0.146691 |
Target: 5'- gCCCGGUCgGCAUcccCcGCCgCCGGCCGGg -3' miRNA: 3'- -GGGCCAG-CGUAac-GcCGG-GGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 7032 | 0.73 | 0.162393 |
Target: 5'- gCCGGUCGaccggccggcgauCGagGCGG-CCCGGCCGGa -3' miRNA: 3'- gGGCCAGC-------------GUaaCGCCgGGGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 20462 | 0.73 | 0.162815 |
Target: 5'- gCCCGaGuagccaacgccUCGCc-UGUGGCCCCGACCGu -3' miRNA: 3'- -GGGC-C-----------AGCGuaACGCCGGGGCUGGCc -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 3579 | 0.72 | 0.167088 |
Target: 5'- cCCCGGcCGCAaccgGCccGCCCCGACCu- -3' miRNA: 3'- -GGGCCaGCGUaa--CGc-CGGGGCUGGcc -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 27669 | 0.71 | 0.221074 |
Target: 5'- gCCCGGaCGaCAUUcCGGCCgCgUGACCGGg -3' miRNA: 3'- -GGGCCaGC-GUAAcGCCGG-G-GCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 37602 | 0.72 | 0.180516 |
Target: 5'- aCCGGcUCGCGUUGCGaGUCggCGACCGa -3' miRNA: 3'- gGGCC-AGCGUAACGC-CGGg-GCUGGCc -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 27118 | 0.72 | 0.167088 |
Target: 5'- gCUCGG-CGCcacgGCGGCaCCGGCCGGc -3' miRNA: 3'- -GGGCCaGCGuaa-CGCCGgGGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 14370 | 0.75 | 0.1096 |
Target: 5'- aCCCGG-CGCAgcuCGGCgaCCGGCCGGu -3' miRNA: 3'- -GGGCCaGCGUaacGCCGg-GGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 6148 | 0.72 | 0.184727 |
Target: 5'- aCCCGGUCGCAccgGCucaucgaGGUCCCcuCCGGc -3' miRNA: 3'- -GGGCCAGCGUaa-CG-------CCGGGGcuGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 39552 | 0.75 | 0.1096 |
Target: 5'- aCCGGcccCGCGgc-CGGUCCCGGCCGGu -3' miRNA: 3'- gGGCCa--GCGUaacGCCGGGGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 11596 | 0.72 | 0.167088 |
Target: 5'- uCgCGGUgGCGUgggGCGGCCgCUGGCgGGa -3' miRNA: 3'- -GgGCCAgCGUAa--CGCCGG-GGCUGgCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 26769 | 0.72 | 0.1852 |
Target: 5'- cCCCGG-CGCGggUGCGGCggauCgUGGCCGGc -3' miRNA: 3'- -GGGCCaGCGUa-ACGCCG----GgGCUGGCC- -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 22021 | 0.7 | 0.226657 |
Target: 5'- gCCGGgccCGCcg-GaCGGUCCCGGCCGa -3' miRNA: 3'- gGGCCa--GCGuaaC-GCCGGGGCUGGCc -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 46521 | 0.74 | 0.132036 |
Target: 5'- cCUCGGUacCGCGUU-CGGCCCCGACUc- -3' miRNA: 3'- -GGGCCA--GCGUAAcGCCGGGGCUGGcc -5' |
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26274 | 3' | -61.3 | NC_005345.2 | + | 7336 | 0.73 | 0.154562 |
Target: 5'- gCCGaGUCGCAcgcggUGUGGCCCgCGguggcgcaGCCGGg -3' miRNA: 3'- gGGC-CAGCGUa----ACGCCGGG-GC--------UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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