miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26276 5' -56.9 NC_005345.2 + 32758 1.08 0.000749
Target:  5'- cAGCGGUGUACGAGCCGACGAACCCGAu -3'
miRNA:   3'- -UCGCCACAUGCUCGGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 24309 0.8 0.083716
Target:  5'- cGCGGgaccgcuUGcGCGAGCCGuCGAACCCGAg -3'
miRNA:   3'- uCGCC-------ACaUGCUCGGCuGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 8013 0.77 0.138718
Target:  5'- cGCGGUuucACGAGCuCGACGGGCUCGAc -3'
miRNA:   3'- uCGCCAca-UGCUCG-GCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 16929 0.77 0.14257
Target:  5'- cGCGGUcaccgcggACGAGCCcggguuGACGAGCCCGAc -3'
miRNA:   3'- uCGCCAca------UGCUCGG------CUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 33642 0.77 0.144138
Target:  5'- aAGCGGUG-AUGAGCCGAUGAcgaucgccgacaucuGCaCCGAg -3'
miRNA:   3'- -UCGCCACaUGCUCGGCUGCU---------------UG-GGCU- -5'
26276 5' -56.9 NC_005345.2 + 2891 0.76 0.172378
Target:  5'- cGGCGGUGgccucgACGAGCggauCGGCGGACCgGGc -3'
miRNA:   3'- -UCGCCACa-----UGCUCG----GCUGCUUGGgCU- -5'
26276 5' -56.9 NC_005345.2 + 30488 0.75 0.191812
Target:  5'- cGCGGUGgugcgcCGGGUCauGGCGAACCCGGg -3'
miRNA:   3'- uCGCCACau----GCUCGG--CUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5593 0.75 0.196442
Target:  5'- aGGCGGUcgGCGAGCuugucggCGACGAGCUCGGc -3'
miRNA:   3'- -UCGCCAcaUGCUCG-------GCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 9652 0.75 0.196962
Target:  5'- cGGCGuGUGggGCGGGCUGACGuACCgCGAg -3'
miRNA:   3'- -UCGC-CACa-UGCUCGGCUGCuUGG-GCU- -5'
26276 5' -56.9 NC_005345.2 + 12367 0.74 0.207626
Target:  5'- uGCGGcUGUGCcGAucGCCGACGccGACCCGGu -3'
miRNA:   3'- uCGCC-ACAUG-CU--CGGCUGC--UUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 6467 0.74 0.213142
Target:  5'- gAGCGGgccgccgagcUGUACG-G-CGGCGAGCCCGAg -3'
miRNA:   3'- -UCGCC----------ACAUGCuCgGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 6549 0.73 0.236478
Target:  5'- gGGCGGUGggggACGuggcuacGCgGGCGGACCCGu -3'
miRNA:   3'- -UCGCCACa---UGCu------CGgCUGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 48894 0.73 0.242637
Target:  5'- uGGCGGcgagGUGCGGG-CGGCGAuggcuCCCGAg -3'
miRNA:   3'- -UCGCCa---CAUGCUCgGCUGCUu----GGGCU- -5'
26276 5' -56.9 NC_005345.2 + 7864 0.73 0.255356
Target:  5'- cGCaGGUGUACagccuGCCGugGGACgCCGAg -3'
miRNA:   3'- uCG-CCACAUGcu---CGGCugCUUG-GGCU- -5'
26276 5' -56.9 NC_005345.2 + 3175 0.73 0.261917
Target:  5'- cGgGGUGc-CGGGUCGGCGAGCCCuGAg -3'
miRNA:   3'- uCgCCACauGCUCGGCUGCUUGGG-CU- -5'
26276 5' -56.9 NC_005345.2 + 10596 0.72 0.275452
Target:  5'- gAGCGGUGgcACGAGCagCGGCGcggccggucGGCCCGGg -3'
miRNA:   3'- -UCGCCACa-UGCUCG--GCUGC---------UUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 23598 0.72 0.275452
Target:  5'- cGCGGcGUucggcGCGAcGCCGGCGGACCgGGc -3'
miRNA:   3'- uCGCCaCA-----UGCU-CGGCUGCUUGGgCU- -5'
26276 5' -56.9 NC_005345.2 + 19037 0.72 0.275452
Target:  5'- gAGCcGUcgGUACGggGGUCGGCGAACCCGGc -3'
miRNA:   3'- -UCGcCA--CAUGC--UCGGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 48331 0.72 0.282426
Target:  5'- cGCGGUGUgacggcccccggGCGAGCagguguaaGCGGGCCCGGu -3'
miRNA:   3'- uCGCCACA------------UGCUCGgc------UGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 33320 0.72 0.282426
Target:  5'- cGCGGUGUAgcuCGGGCCGuCG-GCCgGAg -3'
miRNA:   3'- uCGCCACAU---GCUCGGCuGCuUGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.