miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26276 5' -56.9 NC_005345.2 + 8013 0.77 0.138718
Target:  5'- cGCGGUuucACGAGCuCGACGGGCUCGAc -3'
miRNA:   3'- uCGCCAca-UGCUCG-GCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5465 0.7 0.403814
Target:  5'- gGGCGGUGc-CGAG-UGACcGACCCGAa -3'
miRNA:   3'- -UCGCCACauGCUCgGCUGcUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 9731 0.69 0.412999
Target:  5'- cGCGGgccGCGAccgcGCCGACGcuCCCGGg -3'
miRNA:   3'- uCGCCacaUGCU----CGGCUGCuuGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 30256 0.66 0.639831
Target:  5'- cGCGGccgccgagcaGgcCGGGCuCGuCGAGCCCGAg -3'
miRNA:   3'- uCGCCa---------CauGCUCG-GCuGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 7864 0.73 0.255356
Target:  5'- cGCaGGUGUACagccuGCCGugGGACgCCGAg -3'
miRNA:   3'- uCG-CCACAUGcu---CGGCugCUUG-GGCU- -5'
26276 5' -56.9 NC_005345.2 + 10596 0.72 0.275452
Target:  5'- gAGCGGUGgcACGAGCagCGGCGcggccggucGGCCCGGg -3'
miRNA:   3'- -UCGCCACa-UGCUCG--GCUGC---------UUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 48331 0.72 0.282426
Target:  5'- cGCGGUGUgacggcccccggGCGAGCagguguaaGCGGGCCCGGu -3'
miRNA:   3'- uCGCCACA------------UGCUCGgc------UGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 13611 0.72 0.304187
Target:  5'- cGGCGGUGccCGAGCCccgcGAgGAACCgGAc -3'
miRNA:   3'- -UCGCCACauGCUCGG----CUgCUUGGgCU- -5'
26276 5' -56.9 NC_005345.2 + 23360 0.71 0.335169
Target:  5'- uGCGcUGggaGCGGGCCGAgGcGCCCGAg -3'
miRNA:   3'- uCGCcACa--UGCUCGGCUgCuUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 8760 0.7 0.385837
Target:  5'- cGGCGGUGU---GGCUGGCGugccacacGACCCGGu -3'
miRNA:   3'- -UCGCCACAugcUCGGCUGC--------UUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 37934 0.7 0.368396
Target:  5'- cGCGGacgccuCGAcGCCGACGGuGCCCGAg -3'
miRNA:   3'- uCGCCacau--GCU-CGGCUGCU-UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 9178 0.71 0.335169
Target:  5'- cGGUcGUGUGCGAGCUGAUcGACgCCGGg -3'
miRNA:   3'- -UCGcCACAUGCUCGGCUGcUUG-GGCU- -5'
26276 5' -56.9 NC_005345.2 + 30488 0.75 0.191812
Target:  5'- cGCGGUGgugcgcCGGGUCauGGCGAACCCGGg -3'
miRNA:   3'- uCGCCACau----GCUCGG--CUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 19763 0.7 0.377048
Target:  5'- aGGCGGcGgcCGAGCCGuACGAcaCCGAg -3'
miRNA:   3'- -UCGCCaCauGCUCGGC-UGCUugGGCU- -5'
26276 5' -56.9 NC_005345.2 + 9652 0.75 0.196962
Target:  5'- cGGCGuGUGggGCGGGCUGACGuACCgCGAg -3'
miRNA:   3'- -UCGC-CACa-UGCUCGGCUGCuUGG-GCU- -5'
26276 5' -56.9 NC_005345.2 + 48701 0.72 0.304187
Target:  5'- gGGCGG-GUAUGcGCC-ACGGACCCGc -3'
miRNA:   3'- -UCGCCaCAUGCuCGGcUGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 5507 0.7 0.377048
Target:  5'- gAGCGGgGUcgcuacuaccGCGAccccGCCGGgGGGCCCGAc -3'
miRNA:   3'- -UCGCCaCA----------UGCU----CGGCUgCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 26977 0.69 0.412999
Target:  5'- cGCGGcGUucgACGGGCUGuCGAGCCUGc -3'
miRNA:   3'- uCGCCaCA---UGCUCGGCuGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 6467 0.74 0.213142
Target:  5'- gAGCGGgccgccgagcUGUACG-G-CGGCGAGCCCGAg -3'
miRNA:   3'- -UCGCC----------ACAUGCuCgGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 23598 0.72 0.275452
Target:  5'- cGCGGcGUucggcGCGAcGCCGGCGGACCgGGc -3'
miRNA:   3'- uCGCCaCA-----UGCU-CGGCUGCUUGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.