miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26276 5' -56.9 NC_005345.2 + 648 0.67 0.553363
Target:  5'- uGCGGcGUgaGCGGGaCCGuGCGgAACCCGGc -3'
miRNA:   3'- uCGCCaCA--UGCUC-GGC-UGC-UUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 681 0.71 0.343267
Target:  5'- gAGUGGaGUACGGGuuGAgCGAuCCCGGc -3'
miRNA:   3'- -UCGCCaCAUGCUCggCU-GCUuGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 780 0.66 0.596363
Target:  5'- cGGCGGcGgGgGAuGCCGAcCGGGCCCGc -3'
miRNA:   3'- -UCGCCaCaUgCU-CGGCU-GCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 2040 0.67 0.532199
Target:  5'- gAGCGGgcccgGcGCGGcCCGGCGGGCCgCGGc -3'
miRNA:   3'- -UCGCCa----CaUGCUcGGCUGCUUGG-GCU- -5'
26276 5' -56.9 NC_005345.2 + 2547 0.68 0.479694
Target:  5'- cGCGGUGgcgacgGCGAGUgcccgguCGACGuGCUCGGg -3'
miRNA:   3'- uCGCCACa-----UGCUCG-------GCUGCuUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 2777 0.68 0.501028
Target:  5'- cGGCGGccucgGUACGGcuugucggcGCCGGCGugcGCUCGAu -3'
miRNA:   3'- -UCGCCa----CAUGCU---------CGGCUGCu--UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 2891 0.76 0.172378
Target:  5'- cGGCGGUGgccucgACGAGCggauCGGCGGACCgGGc -3'
miRNA:   3'- -UCGCCACa-----UGCUCG----GCUGCUUGGgCU- -5'
26276 5' -56.9 NC_005345.2 + 3175 0.73 0.261917
Target:  5'- cGgGGUGc-CGGGUCGGCGAGCCCuGAg -3'
miRNA:   3'- uCgCCACauGCUCGGCUGCUUGGG-CU- -5'
26276 5' -56.9 NC_005345.2 + 3439 0.66 0.596363
Target:  5'- gGGCGGcGaUGCGGGCCc-CGAGCUCGc -3'
miRNA:   3'- -UCGCCaC-AUGCUCGGcuGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 4032 0.69 0.412074
Target:  5'- cGCcccUGUGCGAcgacggcGCCGACGAGCgCCGAc -3'
miRNA:   3'- uCGcc-ACAUGCU-------CGGCUGCUUG-GGCU- -5'
26276 5' -56.9 NC_005345.2 + 4973 0.67 0.531148
Target:  5'- uGCGGUGUcgcggccgaucggACGAacgcgcucGCCaugguGACGAGCCCGc -3'
miRNA:   3'- uCGCCACA-------------UGCU--------CGG-----CUGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 5165 0.68 0.521726
Target:  5'- cGGCGGccgACGAGUCGgGCGAGCcgCCGGg -3'
miRNA:   3'- -UCGCCacaUGCUCGGC-UGCUUG--GGCU- -5'
26276 5' -56.9 NC_005345.2 + 5334 0.66 0.639831
Target:  5'- aAGCGcugcaGUGCGGuGCCGugGGcgcgcuGCCCGGc -3'
miRNA:   3'- -UCGCca---CAUGCU-CGGCugCU------UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5465 0.7 0.403814
Target:  5'- gGGCGGUGc-CGAG-UGACcGACCCGAa -3'
miRNA:   3'- -UCGCCACauGCUCgGCUGcUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5507 0.7 0.377048
Target:  5'- gAGCGGgGUcgcuacuaccGCGAccccGCCGGgGGGCCCGAc -3'
miRNA:   3'- -UCGCCaCA----------UGCU----CGGCUgCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5593 0.75 0.196442
Target:  5'- aGGCGGUcgGCGAGCuugucggCGACGAGCUCGGc -3'
miRNA:   3'- -UCGCCAcaUGCUCG-------GCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5632 0.68 0.500003
Target:  5'- cGCGGUGaucgcCGAcccgaucggcaccGcCCGGCGGGCCCGGa -3'
miRNA:   3'- uCGCCACau---GCU-------------C-GGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 6467 0.74 0.213142
Target:  5'- gAGCGGgccgccgagcUGUACG-G-CGGCGAGCCCGAg -3'
miRNA:   3'- -UCGCC----------ACAUGCuCgGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 6549 0.73 0.236478
Target:  5'- gGGCGGUGggggACGuggcuacGCgGGCGGACCCGu -3'
miRNA:   3'- -UCGCCACa---UGCu------CGgCUGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 6701 0.66 0.62895
Target:  5'- gAGgGGUGgcACGAgcaGCCGGCGGGCaCGGu -3'
miRNA:   3'- -UCgCCACa-UGCU---CGGCUGCUUGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.