miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 5' -65 NC_005345.2 + 32184 1.11 0.00007
Target:  5'- aCGGCAGCCGGCCGAGGUGCCGCAGGCg -3'
miRNA:   3'- -GCCGUCGGCCGGCUCCACGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 32991 0.8 0.022452
Target:  5'- gGcGCAGgCGGCCGGGGUGgCGgGGGCg -3'
miRNA:   3'- gC-CGUCgGCCGGCUCCACgGCgUCCG- -5'
26277 5' -65 NC_005345.2 + 7365 0.78 0.033208
Target:  5'- gGcGCAGCCGGgCGGGGgugGCCGCugauguGGCa -3'
miRNA:   3'- gC-CGUCGGCCgGCUCCa--CGGCGu-----CCG- -5'
26277 5' -65 NC_005345.2 + 38322 0.77 0.036102
Target:  5'- uCGGC-GCCGGCuCGuGucUGCCGCAGGCa -3'
miRNA:   3'- -GCCGuCGGCCG-GCuCc-ACGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 37780 0.77 0.037121
Target:  5'- aGGCGGCCGcGaCCGGGGcugcUGCCGUuGGCg -3'
miRNA:   3'- gCCGUCGGC-C-GGCUCC----ACGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 26625 0.77 0.038594
Target:  5'- cCGGUGuGCCcgaggacuacaccgaGGCCGAGGUGCgGUGGGCg -3'
miRNA:   3'- -GCCGU-CGG---------------CCGGCUCCACGgCGUCCG- -5'
26277 5' -65 NC_005345.2 + 22288 0.76 0.041485
Target:  5'- aGGCGGCCggggcgacgugGGUCGAGGUGUCGC-GGUc -3'
miRNA:   3'- gCCGUCGG-----------CCGGCUCCACGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 22015 0.76 0.042652
Target:  5'- gGGCAGCuCGacGCCGGccGGUGCCGCcguGGCg -3'
miRNA:   3'- gCCGUCG-GC--CGGCU--CCACGGCGu--CCG- -5'
26277 5' -65 NC_005345.2 + 21583 0.76 0.043488
Target:  5'- cCGGCGcCCGGCCGccGGGguccgacgagccgaUGCCGCGGGUg -3'
miRNA:   3'- -GCCGUcGGCCGGC--UCC--------------ACGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 33470 0.76 0.045083
Target:  5'- gCGGCagaucGGCCGGCCGAcGGUGCagGUcGGCg -3'
miRNA:   3'- -GCCG-----UCGGCCGGCU-CCACGg-CGuCCG- -5'
26277 5' -65 NC_005345.2 + 8929 0.76 0.04765
Target:  5'- aCGGCGGCCGcccCCGuGGgcggGCUGCGGGUg -3'
miRNA:   3'- -GCCGUCGGCc--GGCuCCa---CGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 23938 0.76 0.04765
Target:  5'- cCGGUGaCCGGCCGGGGgugauucaCCGCGGGCu -3'
miRNA:   3'- -GCCGUcGGCCGGCUCCac------GGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 26877 0.75 0.051768
Target:  5'- gCGGCGGUgCGGUCGAugGGUgaggcGCUGCAGGCg -3'
miRNA:   3'- -GCCGUCG-GCCGGCU--CCA-----CGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 5408 0.75 0.053217
Target:  5'- cCGGCGGUCGGCCGAGcGUcucGCCGaguucuucGGCg -3'
miRNA:   3'- -GCCGUCGGCCGGCUC-CA---CGGCgu------CCG- -5'
26277 5' -65 NC_005345.2 + 10803 0.75 0.054705
Target:  5'- aGGCGGaCCGGCuCGAuuGGUGCCuGC-GGCa -3'
miRNA:   3'- gCCGUC-GGCCG-GCU--CCACGG-CGuCCG- -5'
26277 5' -65 NC_005345.2 + 12105 0.74 0.057327
Target:  5'- -cGCcGCCGGCCGGaucccggcucgcccGGUGCCGCugaaAGGCg -3'
miRNA:   3'- gcCGuCGGCCGGCU--------------CCACGGCG----UCCG- -5'
26277 5' -65 NC_005345.2 + 10550 0.74 0.057643
Target:  5'- cCGGCGG-UGGCCGAGGUaaucccgGCCGCGaGCg -3'
miRNA:   3'- -GCCGUCgGCCGGCUCCA-------CGGCGUcCG- -5'
26277 5' -65 NC_005345.2 + 40777 0.74 0.060568
Target:  5'- cCGGuCGGCCGGCgCGGGcGUGUCGCGuuccgugucccaguGGCa -3'
miRNA:   3'- -GCC-GUCGGCCG-GCUC-CACGGCGU--------------CCG- -5'
26277 5' -65 NC_005345.2 + 11463 0.74 0.061069
Target:  5'- uGGCGGCCcacGGCCGAcgacaucaGG-GCCGCgcAGGCg -3'
miRNA:   3'- gCCGUCGG---CCGGCU--------CCaCGGCG--UCCG- -5'
26277 5' -65 NC_005345.2 + 27561 0.74 0.061069
Target:  5'- cCGGguGCCGuuCGGGGgGCCGuCGGGCc -3'
miRNA:   3'- -GCCguCGGCcgGCUCCaCGGC-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.