Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26277 | 5' | -65 | NC_005345.2 | + | 7365 | 0.78 | 0.033208 |
Target: 5'- gGcGCAGCCGGgCGGGGgugGCCGCugauguGGCa -3' miRNA: 3'- gC-CGUCGGCCgGCUCCa--CGGCGu-----CCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 14883 | 0.72 | 0.082473 |
Target: 5'- aGGCgAGUCgGGCCGAGGcggaGCaGCGGGCg -3' miRNA: 3'- gCCG-UCGG-CCGGCUCCa---CGgCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 27131 | 0.72 | 0.087069 |
Target: 5'- gCGGCaccGGCCGGCgucgagcugccCGAGGcGCUGCGcGGCg -3' miRNA: 3'- -GCCG---UCGGCCG-----------GCUCCaCGGCGU-CCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 30370 | 0.66 | 0.258928 |
Target: 5'- aCGGCAGCCcGCgGcGG-GC-GCAGGUc -3' miRNA: 3'- -GCCGUCGGcCGgCuCCaCGgCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 8929 | 0.76 | 0.04765 |
Target: 5'- aCGGCGGCCGcccCCGuGGgcggGCUGCGGGUg -3' miRNA: 3'- -GCCGUCGGCc--GGCuCCa---CGGCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 23938 | 0.76 | 0.04765 |
Target: 5'- cCGGUGaCCGGCCGGGGgugauucaCCGCGGGCu -3' miRNA: 3'- -GCCGUcGGCCGGCUCCac------GGCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 5408 | 0.75 | 0.053217 |
Target: 5'- cCGGCGGUCGGCCGAGcGUcucGCCGaguucuucGGCg -3' miRNA: 3'- -GCCGUCGGCCGGCUC-CA---CGGCgu------CCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 10803 | 0.75 | 0.054705 |
Target: 5'- aGGCGGaCCGGCuCGAuuGGUGCCuGC-GGCa -3' miRNA: 3'- gCCGUC-GGCCG-GCU--CCACGG-CGuCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 15376 | 0.74 | 0.062597 |
Target: 5'- aCGGCAGCgcggggguacuUGGCCcGGGUGCUGCcugcgacGGGCa -3' miRNA: 3'- -GCCGUCG-----------GCCGGcUCCACGGCG-------UCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 24968 | 0.73 | 0.080263 |
Target: 5'- gGGCGGCCGGUCGAGuggcaaGUGCcCGUcgucgAGGUg -3' miRNA: 3'- gCCGUCGGCCGGCUC------CACG-GCG-----UCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 20113 | 0.74 | 0.066307 |
Target: 5'- gGGguGCCGaUCGcuGUGCCGUAGGCg -3' miRNA: 3'- gCCguCGGCcGGCucCACGGCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 11463 | 0.74 | 0.061069 |
Target: 5'- uGGCGGCCcacGGCCGAcgacaucaGG-GCCGCgcAGGCg -3' miRNA: 3'- gCCGUCGG---CCGGCU--------CCaCGGCG--UCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 26625 | 0.77 | 0.038594 |
Target: 5'- cCGGUGuGCCcgaggacuacaccgaGGCCGAGGUGCgGUGGGCg -3' miRNA: 3'- -GCCGU-CGG---------------CCGGCUCCACGgCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 37556 | 0.74 | 0.066307 |
Target: 5'- cCGGCAcCuCGGcCCGAGGcgGgCGCAGGCg -3' miRNA: 3'- -GCCGUcG-GCC-GGCUCCa-CgGCGUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 22288 | 0.76 | 0.041485 |
Target: 5'- aGGCGGCCggggcgacgugGGUCGAGGUGUCGC-GGUc -3' miRNA: 3'- gCCGUCGG-----------CCGGCUCCACGGCGuCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 12105 | 0.74 | 0.057327 |
Target: 5'- -cGCcGCCGGCCGGaucccggcucgcccGGUGCCGCugaaAGGCg -3' miRNA: 3'- gcCGuCGGCCGGCU--------------CCACGGCG----UCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 21811 | 0.73 | 0.071976 |
Target: 5'- uGGCGG-CGGCCGAGG-GuCCGCAGa- -3' miRNA: 3'- gCCGUCgGCCGGCUCCaC-GGCGUCcg -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 40210 | 0.72 | 0.084742 |
Target: 5'- uCGGCAGCUacGUCGAgacGGUGCCGguCGGGCa -3' miRNA: 3'- -GCCGUCGGc-CGGCU---CCACGGC--GUCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 33470 | 0.76 | 0.045083 |
Target: 5'- gCGGCagaucGGCCGGCCGAcGGUGCagGUcGGCg -3' miRNA: 3'- -GCCG-----UCGGCCGGCU-CCACGg-CGuCCG- -5' |
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26277 | 5' | -65 | NC_005345.2 | + | 26877 | 0.75 | 0.051768 |
Target: 5'- gCGGCGGUgCGGUCGAugGGUgaggcGCUGCAGGCg -3' miRNA: 3'- -GCCGUCG-GCCGGCU--CCA-----CGGCGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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