miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 5' -65 NC_005345.2 + 775 0.7 0.117002
Target:  5'- cCGGCcGgCGGCgGGGGaUGCCGacCGGGCc -3'
miRNA:   3'- -GCCGuCgGCCGgCUCC-ACGGC--GUCCG- -5'
26277 5' -65 NC_005345.2 + 1198 0.72 0.089458
Target:  5'- uCGGCAGuCCGGCCcgcGGGccacGCCGCGcGGUa -3'
miRNA:   3'- -GCCGUC-GGCCGGc--UCCa---CGGCGU-CCG- -5'
26277 5' -65 NC_005345.2 + 1259 0.68 0.17291
Target:  5'- gCGGCAcgauccacagcacGCCGGCCGAcGUcaccGUCGcCGGGCc -3'
miRNA:   3'- -GCCGU-------------CGGCCGGCUcCA----CGGC-GUCCG- -5'
26277 5' -65 NC_005345.2 + 1570 0.66 0.228989
Target:  5'- gCGGCAGUCGccGCCGuGGggGCCGuCAcGaGCg -3'
miRNA:   3'- -GCCGUCGGC--CGGCuCCa-CGGC-GU-C-CG- -5'
26277 5' -65 NC_005345.2 + 1976 0.73 0.073967
Target:  5'- gGGCAGaaCUGGCa---GUGCCGCAGGCg -3'
miRNA:   3'- gCCGUC--GGCCGgcucCACGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 2044 0.67 0.217857
Target:  5'- gGGCccGGCgCGGcCCGGcGG-GCCGC-GGCg -3'
miRNA:   3'- gCCG--UCG-GCC-GGCU-CCaCGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 2402 0.72 0.089458
Target:  5'- -cGCGGgUGuGCUGGGGUGCUGCAGcGCg -3'
miRNA:   3'- gcCGUCgGC-CGGCUCCACGGCGUC-CG- -5'
26277 5' -65 NC_005345.2 + 2650 0.68 0.17291
Target:  5'- aGGUAGguacccucgCGGCCGAcuugaucGGcgagGCCGCGGGCg -3'
miRNA:   3'- gCCGUCg--------GCCGGCU-------CCa---CGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 2997 0.72 0.094422
Target:  5'- uCGGCGGUacgggCGGCCGAGGccaguaGCCGgGcGGCg -3'
miRNA:   3'- -GCCGUCG-----GCCGGCUCCa-----CGGCgU-CCG- -5'
26277 5' -65 NC_005345.2 + 3162 0.72 0.084742
Target:  5'- uCGGCgAGCUcGUCGGGGUGCCGgGucGGCg -3'
miRNA:   3'- -GCCG-UCGGcCGGCUCCACGGCgU--CCG- -5'
26277 5' -65 NC_005345.2 + 3236 0.66 0.252694
Target:  5'- gGGCAGCgcacugugcacgCGGCgCucGGUGCCG-AGGUa -3'
miRNA:   3'- gCCGUCG------------GCCG-GcuCCACGGCgUCCG- -5'
26277 5' -65 NC_005345.2 + 3307 0.67 0.198986
Target:  5'- gGGC-GUCGGCgagugcuuCGAGGguggcgucacucggGCUGCGGGCg -3'
miRNA:   3'- gCCGuCGGCCG--------GCUCCa-------------CGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 3396 0.7 0.120156
Target:  5'- aCGGCGGCgaguucgGGCUGAGagagGCgGCGGGCg -3'
miRNA:   3'- -GCCGUCGg------CCGGCUCca--CGgCGUCCG- -5'
26277 5' -65 NC_005345.2 + 3484 0.67 0.217857
Target:  5'- cCGGguGCaCuGCCc-GGUcGUCGCAGGCg -3'
miRNA:   3'- -GCCguCG-GcCGGcuCCA-CGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 3598 0.69 0.146058
Target:  5'- gGGUcGUCGGCCcacAGGUgaccccacggcccgcGCCGCAGGUg -3'
miRNA:   3'- gCCGuCGGCCGGc--UCCA---------------CGGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 3655 0.71 0.105144
Target:  5'- cCGGCGGCagCGGCCGGGaucGUGUCGUuugccGGGUg -3'
miRNA:   3'- -GCCGUCG--GCCGGCUC---CACGGCG-----UCCG- -5'
26277 5' -65 NC_005345.2 + 3706 0.69 0.148368
Target:  5'- uCGGCcGCCGGCggCGAGGUGCagcugaucguuCGCccGCg -3'
miRNA:   3'- -GCCGuCGGCCG--GCUCCACG-----------GCGucCG- -5'
26277 5' -65 NC_005345.2 + 3760 0.69 0.15918
Target:  5'- uGGCuccGCuggaCGGCCGAGGUgaacgcggacccgcGCCGCAcGGUc -3'
miRNA:   3'- gCCGu--CG----GCCGGCUCCA--------------CGGCGU-CCG- -5'
26277 5' -65 NC_005345.2 + 4189 0.67 0.223364
Target:  5'- gGGCGGCaGGCCGugcAGGcGgCGC-GGCa -3'
miRNA:   3'- gCCGUCGgCCGGC---UCCaCgGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 4224 0.71 0.098846
Target:  5'- gCGGUAcGCCGaGCCGAuGGUcGCCGCugcggagcgggacgAGGCc -3'
miRNA:   3'- -GCCGU-CGGC-CGGCU-CCA-CGGCG--------------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.