Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26278 | 5' | -58.1 | NC_005345.2 | + | 29949 | 0.66 | 0.562884 |
Target: 5'- gCUCGACgUCGGGgccgUCGGgCUCgucgucgaGGGg- -3' miRNA: 3'- -GAGCUGgAGCCCa---AGCUgGAG--------CCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 19005 | 0.66 | 0.562884 |
Target: 5'- -aCGACCUcgaCGGGUggcgcgcCGcCCUCGGGc- -3' miRNA: 3'- gaGCUGGA---GCCCAa------GCuGGAGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 18344 | 0.66 | 0.531174 |
Target: 5'- gUCGGCC-CGGGUcgaggUCGACCagUCGGu-- -3' miRNA: 3'- gAGCUGGaGCCCA-----AGCUGG--AGCCcaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 39205 | 0.66 | 0.520745 |
Target: 5'- --gGGCCgCGGGUuggCGACCgUCGGGc- -3' miRNA: 3'- gagCUGGaGCCCAa--GCUGG-AGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 40979 | 0.67 | 0.489965 |
Target: 5'- aUCGACCUCGGcGUcggcggCGACUUCcuGGUUc -3' miRNA: 3'- gAGCUGGAGCC-CAa-----GCUGGAGc-CCAA- -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 9591 | 0.67 | 0.479893 |
Target: 5'- -aCGACCggcCGGGacCGGCCgCGGGg- -3' miRNA: 3'- gaGCUGGa--GCCCaaGCUGGaGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 40753 | 0.67 | 0.479893 |
Target: 5'- gUCGACCggcagcggcucgUCGGGccggUCGGCCggcgCGGGc- -3' miRNA: 3'- gAGCUGG------------AGCCCa---AGCUGGa---GCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 16481 | 0.67 | 0.460061 |
Target: 5'- gUCGACCUCGGccucgaCGGCgUCGaGGUUg -3' miRNA: 3'- gAGCUGGAGCCcaa---GCUGgAGC-CCAA- -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 4339 | 0.67 | 0.460061 |
Target: 5'- aUCGGCCgagcCGGGgUCcuGCCUCGGGc- -3' miRNA: 3'- gAGCUGGa---GCCCaAGc-UGGAGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 40052 | 0.67 | 0.460061 |
Target: 5'- gCUCGACCacacagCGGGgaccgucaccgUCGACCgCGGGc- -3' miRNA: 3'- -GAGCUGGa-----GCCCa----------AGCUGGaGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 31101 | 0.67 | 0.450309 |
Target: 5'- gCUCGGgUUCGGGUUCGAggugcaCGGGUUc -3' miRNA: 3'- -GAGCUgGAGCCCAAGCUgga---GCCCAA- -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 43954 | 0.68 | 0.412482 |
Target: 5'- -cCGGCCgugcCGGGgcgGACCUCGGGc- -3' miRNA: 3'- gaGCUGGa---GCCCaagCUGGAGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 26952 | 0.7 | 0.343038 |
Target: 5'- -gCGACCggcugaUCGGGUUCGuCCUCGcGGc- -3' miRNA: 3'- gaGCUGG------AGCCCAAGCuGGAGC-CCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 35411 | 0.7 | 0.334972 |
Target: 5'- cCUCGAUgUCGucgucguccGGUUCGGCgUCGGGg- -3' miRNA: 3'- -GAGCUGgAGC---------CCAAGCUGgAGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 31710 | 0.7 | 0.318489 |
Target: 5'- -aCGGuCCUCGGGUgcgcggacgggguUCGggugcACCUCGGGUg -3' miRNA: 3'- gaGCU-GGAGCCCA-------------AGC-----UGGAGCCCAa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 29408 | 0.7 | 0.311614 |
Target: 5'- cCUCGGCCUCGG--UCG-CCUCGcGGg- -3' miRNA: 3'- -GAGCUGGAGCCcaAGCuGGAGC-CCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 33018 | 0.71 | 0.275474 |
Target: 5'- gUCGACgaUCGGGcUCGGCCgCGGGg- -3' miRNA: 3'- gAGCUGg-AGCCCaAGCUGGaGCCCaa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 24825 | 0.71 | 0.267988 |
Target: 5'- aUCGugCUCGGGUUCGACggCUCGcgcaagcGGUc -3' miRNA: 3'- gAGCugGAGCCCAAGCUG--GAGC-------CCAa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 31788 | 0.72 | 0.255445 |
Target: 5'- gUCGACgcaCUCGGGUUCG-CCgucCGGGUc -3' miRNA: 3'- gAGCUG---GAGCCCAAGCuGGa--GCCCAa -5' |
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26278 | 5' | -58.1 | NC_005345.2 | + | 41843 | 0.72 | 0.249038 |
Target: 5'- -cCGACUcaUCGGGgaCGACCUCGGcGUc -3' miRNA: 3'- gaGCUGG--AGCCCaaGCUGGAGCC-CAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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