miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 3' -58.9 NC_005345.2 + 26401 1.1 0.000489
Target:  5'- gCCCGAUCGACCCGUCGUCCUCGCGGAu -3'
miRNA:   3'- -GGGCUAGCUGGGCAGCAGGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 44655 0.78 0.104961
Target:  5'- uCCCGGUCGGCuccuCCGUgcCGUCCUCGCuGAa -3'
miRNA:   3'- -GGGCUAGCUG----GGCA--GCAGGAGCGcCU- -5'
26282 3' -58.9 NC_005345.2 + 9276 0.74 0.188182
Target:  5'- uCCCGcauGUCGGCCgCGgCGUaCCUCGCGGc -3'
miRNA:   3'- -GGGC---UAGCUGG-GCaGCA-GGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 29404 0.73 0.208509
Target:  5'- gCCGccUCGGCCUcgGUCG-CCUCGCGGGc -3'
miRNA:   3'- gGGCu-AGCUGGG--CAGCaGGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 46312 0.73 0.230704
Target:  5'- gCCCGAgCGcACgCUGUCGgCCUCGCGGc -3'
miRNA:   3'- -GGGCUaGC-UG-GGCAGCaGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 8602 0.73 0.236556
Target:  5'- cCUCGGUCGGCCCGaUCGcCCcggUCGgGGGu -3'
miRNA:   3'- -GGGCUAGCUGGGC-AGCaGG---AGCgCCU- -5'
26282 3' -58.9 NC_005345.2 + 26947 0.72 0.242531
Target:  5'- gCUGcgCGACCgGcugaucggguUCGUCCUCGCGGc -3'
miRNA:   3'- gGGCuaGCUGGgC----------AGCAGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 48582 0.72 0.248632
Target:  5'- cCCCGAUUggcgagGACCCGUaCGaCCUCGCgccGGAu -3'
miRNA:   3'- -GGGCUAG------CUGGGCA-GCaGGAGCG---CCU- -5'
26282 3' -58.9 NC_005345.2 + 8961 0.72 0.261213
Target:  5'- gCUCGGgcUCGACCUGUCGcUCCgUCGaCGGGc -3'
miRNA:   3'- -GGGCU--AGCUGGGCAGC-AGG-AGC-GCCU- -5'
26282 3' -58.9 NC_005345.2 + 41546 0.71 0.304956
Target:  5'- aCCUGGUCGACgaCGUCGUgCgcgcgcucgccgugcUCGCGGGc -3'
miRNA:   3'- -GGGCUAGCUGg-GCAGCAgG---------------AGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 6415 0.71 0.307139
Target:  5'- gCCGGUcCGAUCCGagacguuccugcugUCGUCacaCUCGCGGAc -3'
miRNA:   3'- gGGCUA-GCUGGGC--------------AGCAG---GAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 26335 0.71 0.309333
Target:  5'- gCCGuUCGugCCGUCG-CCgucCGCGGu -3'
miRNA:   3'- gGGCuAGCugGGCAGCaGGa--GCGCCu -5'
26282 3' -58.9 NC_005345.2 + 46550 0.7 0.347666
Target:  5'- gCgGAUUGGCuugCCGUgGUCUUUGCGGAg -3'
miRNA:   3'- gGgCUAGCUG---GGCAgCAGGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 20837 0.7 0.355729
Target:  5'- uCCUGGUCGucguCgCCGUCGcCCUUgGCGGGc -3'
miRNA:   3'- -GGGCUAGCu---G-GGCAGCaGGAG-CGCCU- -5'
26282 3' -58.9 NC_005345.2 + 47249 0.69 0.363922
Target:  5'- gCCCGuacaa-CCGUCGgccugCCUCGCGGGu -3'
miRNA:   3'- -GGGCuagcugGGCAGCa----GGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 41496 0.69 0.372245
Target:  5'- gCCCGA-CGACCgGcacacCGUCCcgaaCGCGGAg -3'
miRNA:   3'- -GGGCUaGCUGGgCa----GCAGGa---GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 34371 0.69 0.372245
Target:  5'- uCgCGAUgGACCCGUCGUCg--GCGGu -3'
miRNA:   3'- -GgGCUAgCUGGGCAGCAGgagCGCCu -5'
26282 3' -58.9 NC_005345.2 + 37452 0.69 0.389275
Target:  5'- gCUGGUCGG-CCGUCGaUCCgccugcagCGCGGGc -3'
miRNA:   3'- gGGCUAGCUgGGCAGC-AGGa-------GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 21267 0.69 0.389275
Target:  5'- gUCCGuGUCGuCgCCGUCGUCCccgUCGuCGGGg -3'
miRNA:   3'- -GGGC-UAGCuG-GGCAGCAGG---AGC-GCCU- -5'
26282 3' -58.9 NC_005345.2 + 27104 0.69 0.392742
Target:  5'- aCCgCGGUCGGCUCGUgagcucggccgggacCGUCCg-GCGGGc -3'
miRNA:   3'- -GG-GCUAGCUGGGCA---------------GCAGGagCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.