miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 3' -58.9 NC_005345.2 + 2346 0.68 0.459382
Target:  5'- gUCCGAgCGugcuuggcggcgcaGCCCGgucgCGaCCUCGCGGGc -3'
miRNA:   3'- -GGGCUaGC--------------UGGGCa---GCaGGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 2455 0.66 0.583296
Target:  5'- uCCCGGUguaGGCCUGcccaGUCCUgCGCGcGAg -3'
miRNA:   3'- -GGGCUAg--CUGGGCag--CAGGA-GCGC-CU- -5'
26282 3' -58.9 NC_005345.2 + 3095 0.68 0.46225
Target:  5'- gCCUGAUCGACCC-UCGggCC-C-CGGAc -3'
miRNA:   3'- -GGGCUAGCUGGGcAGCa-GGaGcGCCU- -5'
26282 3' -58.9 NC_005345.2 + 5335 0.67 0.49142
Target:  5'- gCCUGAUCGACCCGgacgcCGagaaggacaCUCGCGaGGc -3'
miRNA:   3'- -GGGCUAGCUGGGCa----GCag-------GAGCGC-CU- -5'
26282 3' -58.9 NC_005345.2 + 6415 0.71 0.307139
Target:  5'- gCCGGUcCGAUCCGagacguuccugcugUCGUCacaCUCGCGGAc -3'
miRNA:   3'- gGGCUA-GCUGGGC--------------AGCAG---GAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 8602 0.73 0.236556
Target:  5'- cCUCGGUCGGCCCGaUCGcCCcggUCGgGGGu -3'
miRNA:   3'- -GGGCUAGCUGGGC-AGCaGG---AGCgCCU- -5'
26282 3' -58.9 NC_005345.2 + 8801 0.66 0.562445
Target:  5'- cCCaCGGcCGuACCCGUCGcCCgccacggCGCGGu -3'
miRNA:   3'- -GG-GCUaGC-UGGGCAGCaGGa------GCGCCu -5'
26282 3' -58.9 NC_005345.2 + 8961 0.72 0.261213
Target:  5'- gCUCGGgcUCGACCUGUCGcUCCgUCGaCGGGc -3'
miRNA:   3'- -GGGCU--AGCUGGGCAGC-AGG-AGC-GCCU- -5'
26282 3' -58.9 NC_005345.2 + 9276 0.74 0.188182
Target:  5'- uCCCGcauGUCGGCCgCGgCGUaCCUCGCGGc -3'
miRNA:   3'- -GGGC---UAGCUGG-GCaGCA-GGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 9446 0.68 0.424829
Target:  5'- gCCCGAgcUCGuCCCGggcggUGUCCggugaUGCGGGg -3'
miRNA:   3'- -GGGCU--AGCuGGGCa----GCAGGa----GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 10621 0.66 0.565561
Target:  5'- gCCGGUCGGCCCGggucgagcagcacgCGUgaCUcagggacCGCGGAc -3'
miRNA:   3'- gGGCUAGCUGGGCa-------------GCAg-GA-------GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 11571 0.67 0.501333
Target:  5'- gCCCGGcagcUCGACgaCGggCG-CCUCGCGGu -3'
miRNA:   3'- -GGGCU----AGCUGg-GCa-GCaGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 13480 0.66 0.572848
Target:  5'- gCCCGA-CGGCaCCG-CGUCggUGCGGu -3'
miRNA:   3'- -GGGCUaGCUG-GGCaGCAGgaGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 13959 0.67 0.521414
Target:  5'- gCCCGcugCGAUCCGUCGaa--CGCGGGc -3'
miRNA:   3'- -GGGCua-GCUGGGCAGCaggaGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 16050 0.66 0.541801
Target:  5'- gCCGAgcgCGAUCCGg-GUCCggGCGGu -3'
miRNA:   3'- gGGCUa--GCUGGGCagCAGGagCGCCu -5'
26282 3' -58.9 NC_005345.2 + 16309 0.69 0.401496
Target:  5'- gCCCGAucgccucgaacUCGGCCCacugcuucccgaGUgCCUCGCGGAa -3'
miRNA:   3'- -GGGCU-----------AGCUGGGcag---------CA-GGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 18278 0.66 0.572848
Target:  5'- gCCGAucugugcgUCGcGCUgGUCGgugUCCUCGCGGc -3'
miRNA:   3'- gGGCU--------AGC-UGGgCAGC---AGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 18579 0.66 0.583296
Target:  5'- cCUCGGUgagguaCaGCCCGcCGUCCUCGCcGAg -3'
miRNA:   3'- -GGGCUA------GcUGGGCaGCAGGAGCGcCU- -5'
26282 3' -58.9 NC_005345.2 + 18904 0.68 0.434016
Target:  5'- gCUCGG-CGGCCgCGaucaUGUCCUCGCGGc -3'
miRNA:   3'- -GGGCUaGCUGG-GCa---GCAGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 19210 0.66 0.541801
Target:  5'- cCCCGAcgUCGAgCCG--GUCCUCGCc-- -3'
miRNA:   3'- -GGGCU--AGCUgGGCagCAGGAGCGccu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.