miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 3' -58.9 NC_005345.2 + 9276 0.74 0.188182
Target:  5'- uCCCGcauGUCGGCCgCGgCGUaCCUCGCGGc -3'
miRNA:   3'- -GGGC---UAGCUGG-GCaGCA-GGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 11571 0.67 0.501333
Target:  5'- gCCCGGcagcUCGACgaCGggCG-CCUCGCGGu -3'
miRNA:   3'- -GGGCU----AGCUGg-GCa-GCaGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 27548 0.66 0.541801
Target:  5'- aCCCGcggcAUCGGCUCGUCGgaccCCg-GCGGc -3'
miRNA:   3'- -GGGC----UAGCUGGGCAGCa---GGagCGCCu -5'
26282 3' -58.9 NC_005345.2 + 46587 0.66 0.572848
Target:  5'- cCCCGAgcacgUCGACCgggcacucgcCGUCG-CCaccgCGUGGAa -3'
miRNA:   3'- -GGGCU-----AGCUGG----------GCAGCaGGa---GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 8961 0.72 0.261213
Target:  5'- gCUCGGgcUCGACCUGUCGcUCCgUCGaCGGGc -3'
miRNA:   3'- -GGGCU--AGCUGGGCAGC-AGG-AGC-GCCU- -5'
26282 3' -58.9 NC_005345.2 + 6415 0.71 0.307139
Target:  5'- gCCGGUcCGAUCCGagacguuccugcugUCGUCacaCUCGCGGAc -3'
miRNA:   3'- gGGCUA-GCUGGGC--------------AGCAG---GAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 34371 0.69 0.372245
Target:  5'- uCgCGAUgGACCCGUCGUCg--GCGGu -3'
miRNA:   3'- -GgGCUAgCUGGGCAGCAGgagCGCCu -5'
26282 3' -58.9 NC_005345.2 + 9446 0.68 0.424829
Target:  5'- gCCCGAgcUCGuCCCGggcggUGUCCggugaUGCGGGg -3'
miRNA:   3'- -GGGCU--AGCuGGGCa----GCAGGa----GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 3095 0.68 0.46225
Target:  5'- gCCUGAUCGACCC-UCGggCC-C-CGGAc -3'
miRNA:   3'- -GGGCUAGCUGGGcAGCa-GGaGcGCCU- -5'
26282 3' -58.9 NC_005345.2 + 36351 0.67 0.49142
Target:  5'- -gUGAUCGACCCGacuuUCG-CCgcguaCGCGGGc -3'
miRNA:   3'- ggGCUAGCUGGGC----AGCaGGa----GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 40898 0.67 0.471874
Target:  5'- cCCCGcgcUCGaACCCGgcgaGUCCU-GCGGGu -3'
miRNA:   3'- -GGGCu--AGC-UGGGCag--CAGGAgCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 32273 0.68 0.461293
Target:  5'- uUCCGAaggCgGACCCGcgcgcguUCGUCCUCgaacuGCGGGa -3'
miRNA:   3'- -GGGCUa--G-CUGGGC-------AGCAGGAG-----CGCCU- -5'
26282 3' -58.9 NC_005345.2 + 46312 0.73 0.230704
Target:  5'- gCCCGAgCGcACgCUGUCGgCCUCGCGGc -3'
miRNA:   3'- -GGGCUaGC-UG-GGCAGCaGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 42924 0.67 0.481599
Target:  5'- aCCGG-CGACCaGcCGgagcaagagCCUCGCGGAc -3'
miRNA:   3'- gGGCUaGCUGGgCaGCa--------GGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 8602 0.73 0.236556
Target:  5'- cCUCGGUCGGCCCGaUCGcCCcggUCGgGGGu -3'
miRNA:   3'- -GGGCUAGCUGGGC-AGCaGG---AGCgCCU- -5'
26282 3' -58.9 NC_005345.2 + 43368 0.68 0.424829
Target:  5'- gCCGGUCGACgCGUaCG-CCgaccUGCGGAc -3'
miRNA:   3'- gGGCUAGCUGgGCA-GCaGGa---GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 5335 0.67 0.49142
Target:  5'- gCCUGAUCGACCCGgacgcCGagaaggacaCUCGCGaGGc -3'
miRNA:   3'- -GGGCUAGCUGGGCa----GCag-------GAGCGC-CU- -5'
26282 3' -58.9 NC_005345.2 + 30800 0.67 0.511333
Target:  5'- aCCGAcuggucgaccUCGACCCGggcCGaCgUCGCGGc -3'
miRNA:   3'- gGGCU----------AGCUGGGCa--GCaGgAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 26947 0.72 0.242531
Target:  5'- gCUGcgCGACCgGcugaucggguUCGUCCUCGCGGc -3'
miRNA:   3'- gGGCuaGCUGGgC----------AGCAGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 26335 0.71 0.309333
Target:  5'- gCCGuUCGugCCGUCG-CCgucCGCGGu -3'
miRNA:   3'- gGGCuAGCugGGCAGCaGGa--GCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.