miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 5' -52.2 NC_005345.2 + 26436 1.1 0.001683
Target:  5'- gGCUCGACGAUGACGUCAUGCCACACGc -3'
miRNA:   3'- -CGAGCUGCUACUGCAGUACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 8755 0.86 0.077548
Target:  5'- cGCgUCGGCGGUGugGcuggCGUGCCACACGa -3'
miRNA:   3'- -CG-AGCUGCUACugCa---GUACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 42071 0.8 0.187461
Target:  5'- uGCUCGGCGAcaGCGUCGaGCUACGCGg -3'
miRNA:   3'- -CGAGCUGCUacUGCAGUaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 44005 0.78 0.265445
Target:  5'- cGCUCGugcACGGUGucgGCGcUCAUGCCGCACc -3'
miRNA:   3'- -CGAGC---UGCUAC---UGC-AGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 11578 0.76 0.331109
Target:  5'- aGCUCGACGAcgggcgccucgcggUGGCGUgGggcgGCCGCugGc -3'
miRNA:   3'- -CGAGCUGCU--------------ACUGCAgUa---CGGUGugC- -5'
26282 5' -52.2 NC_005345.2 + 26241 0.75 0.358966
Target:  5'- uGC-CGACGAUGACG-CGcUGCgGCACGc -3'
miRNA:   3'- -CGaGCUGCUACUGCaGU-ACGgUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 47889 0.75 0.358966
Target:  5'- gGC-CGGCGugcUGugGUCGUGCCGCAg- -3'
miRNA:   3'- -CGaGCUGCu--ACugCAGUACGGUGUgc -5'
26282 5' -52.2 NC_005345.2 + 34759 0.75 0.367725
Target:  5'- gGCggCGGCGGUGACG-CGcgGCUACGCGa -3'
miRNA:   3'- -CGa-GCUGCUACUGCaGUa-CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 19136 0.75 0.385678
Target:  5'- cGCUCGGCGAccucggccggGACGUCGUcGCCGgGCc -3'
miRNA:   3'- -CGAGCUGCUa---------CUGCAGUA-CGGUgUGc -5'
26282 5' -52.2 NC_005345.2 + 41538 0.74 0.423277
Target:  5'- uCUCGGCGAccuggucgacGACGUCGUGCgCGCGCu -3'
miRNA:   3'- cGAGCUGCUa---------CUGCAGUACG-GUGUGc -5'
26282 5' -52.2 NC_005345.2 + 24211 0.74 0.423277
Target:  5'- gGCUCGACGuccucGACacgGUCAucuaucUGCCGCGCGg -3'
miRNA:   3'- -CGAGCUGCua---CUG---CAGU------ACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 6680 0.73 0.494015
Target:  5'- cCUCGACGAcggccucGGCGUCGauaucGCCGCGCGu -3'
miRNA:   3'- cGAGCUGCUa------CUGCAGUa----CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 12417 0.72 0.504568
Target:  5'- -gUCGGcCGAUGACGUCGaggcgcGUCGCGCGg -3'
miRNA:   3'- cgAGCU-GCUACUGCAGUa-----CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 5866 0.72 0.515218
Target:  5'- cCUCGcCGAgGACGUCGUcGCCAC-CGa -3'
miRNA:   3'- cGAGCuGCUaCUGCAGUA-CGGUGuGC- -5'
26282 5' -52.2 NC_005345.2 + 35598 0.72 0.525957
Target:  5'- uGCcCGugGAUGugGUCGacggacagcUGCC-CGCGg -3'
miRNA:   3'- -CGaGCugCUACugCAGU---------ACGGuGUGC- -5'
26282 5' -52.2 NC_005345.2 + 23195 0.72 0.525957
Target:  5'- --cCGuCGAUGuCGUUGUGCCACACc -3'
miRNA:   3'- cgaGCuGCUACuGCAGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 40268 0.72 0.525957
Target:  5'- cGC-CGGCGGgcaUGaguccggagaGCGUCAUGCCGCGCc -3'
miRNA:   3'- -CGaGCUGCU---AC----------UGCAGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 33064 0.72 0.53678
Target:  5'- aGCUCGGCG-UGuACGUgCGgcagcUGCCACGCa -3'
miRNA:   3'- -CGAGCUGCuAC-UGCA-GU-----ACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 7908 0.71 0.569675
Target:  5'- uGCUCGu--AUGACGcgcUCAUgGCCGCACGg -3'
miRNA:   3'- -CGAGCugcUACUGC---AGUA-CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 20802 0.71 0.591882
Target:  5'- -gUCGGCGccGACGgcgCGUGUCGCGCu -3'
miRNA:   3'- cgAGCUGCuaCUGCa--GUACGGUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.