miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 5' -52.2 NC_005345.2 + 1617 0.66 0.870015
Target:  5'- cGUUCGGUGAUGAgGUCG-GUCGCgGCGa -3'
miRNA:   3'- -CGAGCUGCUACUgCAGUaCGGUG-UGC- -5'
26282 5' -52.2 NC_005345.2 + 2734 0.66 0.841998
Target:  5'- cGCcCGGCGAUGACagcggcccgcauguGgagCGcGCCACGCGc -3'
miRNA:   3'- -CGaGCUGCUACUG--------------Ca--GUaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 3320 0.68 0.767594
Target:  5'- uGCuUCGAgGGUGGCGUCAcucggGCUGCGgGc -3'
miRNA:   3'- -CG-AGCUgCUACUGCAGUa----CGGUGUgC- -5'
26282 5' -52.2 NC_005345.2 + 4523 0.66 0.877966
Target:  5'- ---gGACGuAUGACGUCAguaGCCgGCGCu -3'
miRNA:   3'- cgagCUGC-UACUGCAGUa--CGG-UGUGc -5'
26282 5' -52.2 NC_005345.2 + 5866 0.72 0.515218
Target:  5'- cCUCGcCGAgGACGUCGUcGCCAC-CGa -3'
miRNA:   3'- cGAGCuGCUaCUGCAGUA-CGGUGuGC- -5'
26282 5' -52.2 NC_005345.2 + 6616 0.68 0.777853
Target:  5'- cGgaCGAUGcucGUGAUGUCGgugccgaGCCGCGCGg -3'
miRNA:   3'- -CgaGCUGC---UACUGCAGUa------CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 6680 0.73 0.494015
Target:  5'- cCUCGACGAcggccucGGCGUCGauaucGCCGCGCGu -3'
miRNA:   3'- cGAGCUGCUa------CUGCAGUa----CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 7908 0.71 0.569675
Target:  5'- uGCUCGu--AUGACGcgcUCAUgGCCGCACGg -3'
miRNA:   3'- -CGAGCugcUACUGC---AGUA-CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 8025 0.69 0.72523
Target:  5'- aGCUCGACGGgcucGACcUCGcgcaGCUGCACGa -3'
miRNA:   3'- -CGAGCUGCUa---CUGcAGUa---CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 8440 0.66 0.861806
Target:  5'- aGCggucggUGugGAcgGACGgcaCcgGCCACACGu -3'
miRNA:   3'- -CGa-----GCugCUa-CUGCa--GuaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 8755 0.86 0.077548
Target:  5'- cGCgUCGGCGGUGugGcuggCGUGCCACACGa -3'
miRNA:   3'- -CG-AGCUGCUACugCa---GUACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 9960 0.7 0.633279
Target:  5'- aGCUCGcgcGCGGUGAgcucguguaggcguCGUCAuggUGCgACACGg -3'
miRNA:   3'- -CGAGC---UGCUACU--------------GCAGU---ACGgUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 11578 0.76 0.331109
Target:  5'- aGCUCGACGAcgggcgccucgcggUGGCGUgGggcgGCCGCugGc -3'
miRNA:   3'- -CGAGCUGCU--------------ACUGCAgUa---CGGUGugC- -5'
26282 5' -52.2 NC_005345.2 + 12417 0.72 0.504568
Target:  5'- -gUCGGcCGAUGACGUCGaggcgcGUCGCGCGg -3'
miRNA:   3'- cgAGCU-GCUACUGCAGUa-----CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 14379 0.7 0.647846
Target:  5'- aGCUCGGCGAccggccggUGcCGaUCcgGCUGCACGu -3'
miRNA:   3'- -CGAGCUGCU--------ACuGC-AGuaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 14702 0.66 0.85335
Target:  5'- uGCcCGugGuGUGGCGgcgagcUCGUGCUGCACa -3'
miRNA:   3'- -CGaGCugC-UACUGC------AGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 15040 0.67 0.797891
Target:  5'- cGCgUCGGCGgcGAUGUC--GCCGuCGCGg -3'
miRNA:   3'- -CG-AGCUGCuaCUGCAGuaCGGU-GUGC- -5'
26282 5' -52.2 NC_005345.2 + 15872 0.67 0.807647
Target:  5'- aGCUCGGCGcuuGUGAucuucuucCGgCGUGCCAUGCc -3'
miRNA:   3'- -CGAGCUGC---UACU--------GCaGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 18903 0.7 0.625432
Target:  5'- uGCUCGGCGGccGCGaUCAUGuCCuCGCGg -3'
miRNA:   3'- -CGAGCUGCUacUGC-AGUAC-GGuGUGC- -5'
26282 5' -52.2 NC_005345.2 + 19094 0.71 0.614229
Target:  5'- aGCUCGccguCGGUGuCGUCGgcCCACGCGu -3'
miRNA:   3'- -CGAGCu---GCUACuGCAGUacGGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.