miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 5' -52.2 NC_005345.2 + 8755 0.86 0.077548
Target:  5'- cGCgUCGGCGGUGugGcuggCGUGCCACACGa -3'
miRNA:   3'- -CG-AGCUGCUACugCa---GUACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 30722 0.68 0.787957
Target:  5'- -aUCGGCGAgGACcugC-UGCCGCACGu -3'
miRNA:   3'- cgAGCUGCUaCUGca-GuACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 31601 0.67 0.797891
Target:  5'- uGCUCGGCGcgGcccGCGgaucgCAUGgCgACACGg -3'
miRNA:   3'- -CGAGCUGCuaC---UGCa----GUAC-GgUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 34050 0.66 0.877966
Target:  5'- gGCUCGACGGacaGGCGgCGguagGCCugauCACGc -3'
miRNA:   3'- -CGAGCUGCUa--CUGCaGUa---CGGu---GUGC- -5'
26282 5' -52.2 NC_005345.2 + 34759 0.75 0.367725
Target:  5'- gGCggCGGCGGUGACG-CGcgGCUACGCGa -3'
miRNA:   3'- -CGa-GCUGCUACUGCaGUa-CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 24211 0.74 0.423277
Target:  5'- gGCUCGACGuccucGACacgGUCAucuaucUGCCGCGCGg -3'
miRNA:   3'- -CGAGCUGCua---CUG---CAGU------ACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 5866 0.72 0.515218
Target:  5'- cCUCGcCGAgGACGUCGUcGCCAC-CGa -3'
miRNA:   3'- cGAGCuGCUaCUGCAGUA-CGGUGuGC- -5'
26282 5' -52.2 NC_005345.2 + 33064 0.72 0.53678
Target:  5'- aGCUCGGCG-UGuACGUgCGgcagcUGCCACGCa -3'
miRNA:   3'- -CGAGCUGCuAC-UGCA-GU-----ACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 14379 0.7 0.647846
Target:  5'- aGCUCGGCGAccggccggUGcCGaUCcgGCUGCACGu -3'
miRNA:   3'- -CGAGCUGCU--------ACuGC-AGuaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 22438 0.68 0.787957
Target:  5'- gGCg-GACGuucGGCGaCAUGCCACGCc -3'
miRNA:   3'- -CGagCUGCua-CUGCaGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 23755 0.69 0.703423
Target:  5'- aGCUagcaaGggGGCGUCAUGCCgugGCGCGg -3'
miRNA:   3'- -CGAgcug-CuaCUGCAGUACGG---UGUGC- -5'
26282 5' -52.2 NC_005345.2 + 24922 0.7 0.636641
Target:  5'- cGCUCGGCG-UGugGgagCA-GCCGcCGCGa -3'
miRNA:   3'- -CGAGCUGCuACugCa--GUaCGGU-GUGC- -5'
26282 5' -52.2 NC_005345.2 + 42071 0.8 0.187461
Target:  5'- uGCUCGGCGAcaGCGUCGaGCUACGCGg -3'
miRNA:   3'- -CGAGCUGCUacUGCAGUaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 8025 0.69 0.72523
Target:  5'- aGCUCGACGGgcucGACcUCGcgcaGCUGCACGa -3'
miRNA:   3'- -CGAGCUGCUa---CUGcAGUa---CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 11578 0.76 0.331109
Target:  5'- aGCUCGACGAcgggcgccucgcggUGGCGUgGggcgGCCGCugGc -3'
miRNA:   3'- -CGAGCUGCU--------------ACUGCAgUa---CGGUGugC- -5'
26282 5' -52.2 NC_005345.2 + 7908 0.71 0.569675
Target:  5'- uGCUCGu--AUGACGcgcUCAUgGCCGCACGg -3'
miRNA:   3'- -CGAGCugcUACUGC---AGUA-CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 22240 0.68 0.75719
Target:  5'- cGCUCGACGucgacGGCGagGUGCUGC-CGu -3'
miRNA:   3'- -CGAGCUGCua---CUGCagUACGGUGuGC- -5'
26282 5' -52.2 NC_005345.2 + 25549 0.67 0.797891
Target:  5'- aGCUCGACGA-GugGUgGcGCUACuacCGg -3'
miRNA:   3'- -CGAGCUGCUaCugCAgUaCGGUGu--GC- -5'
26282 5' -52.2 NC_005345.2 + 47889 0.75 0.358966
Target:  5'- gGC-CGGCGugcUGugGUCGUGCCGCAg- -3'
miRNA:   3'- -CGaGCUGCu--ACugCAGUACGGUGUgc -5'
26282 5' -52.2 NC_005345.2 + 12417 0.72 0.504568
Target:  5'- -gUCGGcCGAUGACGUCGaggcgcGUCGCGCGg -3'
miRNA:   3'- cgAGCU-GCUACUGCAGUa-----CGGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.