miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26283 3' -61.8 NC_005345.2 + 26289 1.07 0.000348
Target:  5'- aCGGCGCCCGCUCGUCGUCGACACCCUc -3'
miRNA:   3'- -GCCGCGGGCGAGCAGCAGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 36948 0.82 0.029636
Target:  5'- gCGGCGagucCUCGCUCGUCGUCGAguCCCUg -3'
miRNA:   3'- -GCCGC----GGGCGAGCAGCAGCUguGGGA- -5'
26283 3' -61.8 NC_005345.2 + 40709 0.81 0.036079
Target:  5'- -cGCGCCCguGCUCGUCGUCGACagcgACCCg -3'
miRNA:   3'- gcCGCGGG--CGAGCAGCAGCUG----UGGGa -5'
26283 3' -61.8 NC_005345.2 + 44986 0.79 0.050462
Target:  5'- uGaGCGCCUGC-CG-CGUCGACACCCg -3'
miRNA:   3'- gC-CGCGGGCGaGCaGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 37734 0.76 0.078544
Target:  5'- gCGGCGCCgGCUggucggCGUCGUCGAggucgagcugcuCGCCCg -3'
miRNA:   3'- -GCCGCGGgCGA------GCAGCAGCU------------GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 588 0.75 0.092537
Target:  5'- uCGGCGCCCGCaUC--CG-CGACGCCCg -3'
miRNA:   3'- -GCCGCGGGCG-AGcaGCaGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 47607 0.73 0.121225
Target:  5'- aCGGUGCCCgguugGCUCGacgCGccCGACACCCa -3'
miRNA:   3'- -GCCGCGGG-----CGAGCa--GCa-GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 13267 0.73 0.121225
Target:  5'- cCGGCGagcaGCUCGUCGgcgaCGACGCCCc -3'
miRNA:   3'- -GCCGCggg-CGAGCAGCa---GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 35497 0.73 0.134872
Target:  5'- gCGGCGCgCUGCUCGUCGgCGcucACGCCg- -3'
miRNA:   3'- -GCCGCG-GGCGAGCAGCaGC---UGUGGga -5'
26283 3' -61.8 NC_005345.2 + 20803 0.73 0.137401
Target:  5'- uCGGCGCCgacggcgcgugucgCGCUCGUCGUCGu--CCUg -3'
miRNA:   3'- -GCCGCGG--------------GCGAGCAGCAGCuguGGGa -5'
26283 3' -61.8 NC_005345.2 + 47121 0.72 0.14602
Target:  5'- cCGG-GCCCGCUCGaCGagGACGCCg- -3'
miRNA:   3'- -GCCgCGGGCGAGCaGCagCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 37442 0.72 0.149919
Target:  5'- gCGGCgGCCCGCUgGUCGgccgUCGAucCGCCUg -3'
miRNA:   3'- -GCCG-CGGGCGAgCAGC----AGCU--GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 43037 0.72 0.162191
Target:  5'- uCGGCGgCCGCaccuacgCGcggcUCGUCGAUACCCc -3'
miRNA:   3'- -GCCGCgGGCGa------GC----AGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 14815 0.72 0.166478
Target:  5'- gCGGCGggCGCgggUGUgGUCGACGCCCg -3'
miRNA:   3'- -GCCGCggGCGa--GCAgCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 3156 0.71 0.179956
Target:  5'- aCGGCGUCggcgaGCUCGUCGgggugccgggUCGGCgaGCCCUg -3'
miRNA:   3'- -GCCGCGGg----CGAGCAGC----------AGCUG--UGGGA- -5'
26283 3' -61.8 NC_005345.2 + 42806 0.71 0.179956
Target:  5'- cCGGCG-CCGCUCGUgcCGUacgaGACGCUCg -3'
miRNA:   3'- -GCCGCgGGCGAGCA--GCAg---CUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 6184 0.71 0.179956
Target:  5'- cCGGCGCaguuCCGCgCGUUccgCGGCGCCCUg -3'
miRNA:   3'- -GCCGCG----GGCGaGCAGca-GCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 38322 0.71 0.184184
Target:  5'- uCGGCGCCgGCUCGU-GUCugccgcaGGCACCa- -3'
miRNA:   3'- -GCCGCGGgCGAGCAgCAG-------CUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 16133 0.71 0.184659
Target:  5'- gCGGCcgaGCCCGa---UCGUCGACGCCCc -3'
miRNA:   3'- -GCCG---CGGGCgagcAGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 43229 0.71 0.189471
Target:  5'- aCGGCGaCCCGCU----GUCGugGCCCg -3'
miRNA:   3'- -GCCGC-GGGCGAgcagCAGCugUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.