miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26283 3' -61.8 NC_005345.2 + 40709 0.81 0.036079
Target:  5'- -cGCGCCCguGCUCGUCGUCGACagcgACCCg -3'
miRNA:   3'- gcCGCGGG--CGAGCAGCAGCUG----UGGGa -5'
26283 3' -61.8 NC_005345.2 + 43981 0.69 0.237908
Target:  5'- gCGGCucGCCCGaCUCGUCGgccgccgCGGCGCguuCCUc -3'
miRNA:   3'- -GCCG--CGGGC-GAGCAGCa------GCUGUG---GGA- -5'
26283 3' -61.8 NC_005345.2 + 48056 0.69 0.249991
Target:  5'- cCGGCGCgcaCCGCUCGUCGccgUCGAggggACUCUc -3'
miRNA:   3'- -GCCGCG---GGCGAGCAGC---AGCUg---UGGGA- -5'
26283 3' -61.8 NC_005345.2 + 10145 0.66 0.40801
Target:  5'- gCGGCGgCCGCUCuG-CGga-GCGCCCg -3'
miRNA:   3'- -GCCGCgGGCGAG-CaGCagcUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 14815 0.72 0.166478
Target:  5'- gCGGCGggCGCgggUGUgGUCGACGCCCg -3'
miRNA:   3'- -GCCGCggGCGa--GCAgCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 42806 0.71 0.179956
Target:  5'- cCGGCG-CCGCUCGUgcCGUacgaGACGCUCg -3'
miRNA:   3'- -GCCGCgGGCGAGCA--GCAg---CUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 16133 0.71 0.184659
Target:  5'- gCGGCcgaGCCCGa---UCGUCGACGCCCc -3'
miRNA:   3'- -GCCG---CGGGCgagcAGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 43229 0.71 0.189471
Target:  5'- aCGGCGaCCCGCU----GUCGugGCCCg -3'
miRNA:   3'- -GCCGC-GGGCGAgcagCAGCugUGGGa -5'
26283 3' -61.8 NC_005345.2 + 45816 0.7 0.20147
Target:  5'- gCGGCGCCCGCagcccgagugaCGccacccucgaagcacUCGcCGACGCCCUc -3'
miRNA:   3'- -GCCGCGGGCGa----------GC---------------AGCaGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 18901 0.69 0.232052
Target:  5'- cCGGCcggaCCCGCacCGUCGUCGACcgGCUCa -3'
miRNA:   3'- -GCCGc---GGGCGa-GCAGCAGCUG--UGGGa -5'
26283 3' -61.8 NC_005345.2 + 41891 0.7 0.215209
Target:  5'- gCGGCGa-CGCUUGUCGguUCGGcCGCCCg -3'
miRNA:   3'- -GCCGCggGCGAGCAGC--AGCU-GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 34853 0.7 0.199425
Target:  5'- gCGGCGCUCgugacccuGCUCGUCGUCGcCuACCa- -3'
miRNA:   3'- -GCCGCGGG--------CGAGCAGCAGCuG-UGGga -5'
26283 3' -61.8 NC_005345.2 + 47607 0.73 0.121225
Target:  5'- aCGGUGCCCgguugGCUCGacgCGccCGACACCCa -3'
miRNA:   3'- -GCCGCGGG-----CGAGCa--GCa-GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 18507 0.7 0.220704
Target:  5'- aGGCGCUgCGCUCGgCGuccUCGGCGCCa- -3'
miRNA:   3'- gCCGCGG-GCGAGCaGC---AGCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 13267 0.73 0.121225
Target:  5'- cCGGCGagcaGCUCGUCGgcgaCGACGCCCc -3'
miRNA:   3'- -GCCGCggg-CGAGCAGCa---GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 16201 0.71 0.191426
Target:  5'- cCGGCGUCCGcCUCG-CGcUCGACAagcagcugcgcuaacCCCUg -3'
miRNA:   3'- -GCCGCGGGC-GAGCaGC-AGCUGU---------------GGGA- -5'
26283 3' -61.8 NC_005345.2 + 34098 0.7 0.226317
Target:  5'- cCGGCGCCCGCgacggcgacaUCGcCGcCGACGCg-- -3'
miRNA:   3'- -GCCGCGGGCG----------AGCaGCaGCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 3950 0.69 0.243887
Target:  5'- gGGCGUCUGUaCGUCGaggCGACcCCCg -3'
miRNA:   3'- gCCGCGGGCGaGCAGCa--GCUGuGGGa -5'
26283 3' -61.8 NC_005345.2 + 43037 0.72 0.162191
Target:  5'- uCGGCGgCCGCaccuacgCGcggcUCGUCGAUACCCc -3'
miRNA:   3'- -GCCGCgGGCGa------GC----AGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 6184 0.71 0.179956
Target:  5'- cCGGCGCaguuCCGCgCGUUccgCGGCGCCCUg -3'
miRNA:   3'- -GCCGCG----GGCGaGCAGca-GCUGUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.