miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26283 3' -61.8 NC_005345.2 + 588 0.75 0.092537
Target:  5'- uCGGCGCCCGCaUC--CG-CGACGCCCg -3'
miRNA:   3'- -GCCGCGGGCG-AGcaGCaGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 3156 0.71 0.179956
Target:  5'- aCGGCGUCggcgaGCUCGUCGgggugccgggUCGGCgaGCCCUg -3'
miRNA:   3'- -GCCGCGGg----CGAGCAGC----------AGCUG--UGGGA- -5'
26283 3' -61.8 NC_005345.2 + 3722 0.68 0.275672
Target:  5'- gGGUGCCUGCgaCGUCGaCGACGCg-- -3'
miRNA:   3'- gCCGCGGGCGa-GCAGCaGCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 3823 0.68 0.26906
Target:  5'- aCGGuCGUCCGCUgCGagGUCGGCggcgugcggACCCg -3'
miRNA:   3'- -GCC-GCGGGCGA-GCagCAGCUG---------UGGGa -5'
26283 3' -61.8 NC_005345.2 + 3950 0.69 0.243887
Target:  5'- gGGCGUCUGUaCGUCGaggCGACcCCCg -3'
miRNA:   3'- gCCGCGGGCGaGCAGCa--GCUGuGGGa -5'
26283 3' -61.8 NC_005345.2 + 4147 0.66 0.381952
Target:  5'- gCGGCGCUCGUcgagCGggUGUCGACGCg-- -3'
miRNA:   3'- -GCCGCGGGCGa---GCa-GCAGCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 4646 0.67 0.352179
Target:  5'- gGGCcgucGCCUGCUgugccucggcCGUCGccuucgcugcucggcUCGACGCCCg -3'
miRNA:   3'- gCCG----CGGGCGA----------GCAGC---------------AGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 4749 0.67 0.333264
Target:  5'- cCGG-GCUCGaCUCGgaccUCGaCGGCACCCUc -3'
miRNA:   3'- -GCCgCGGGC-GAGC----AGCaGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 4782 0.7 0.204571
Target:  5'- cCGGCGaCCCGUUCGagGUgaCGAuCGCCCc -3'
miRNA:   3'- -GCCGC-GGGCGAGCagCA--GCU-GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 5436 0.67 0.341054
Target:  5'- aCGGCGUUCGUaUCGagGUCGAgGCCg- -3'
miRNA:   3'- -GCCGCGGGCG-AGCagCAGCUgUGGga -5'
26283 3' -61.8 NC_005345.2 + 5611 0.67 0.318078
Target:  5'- gGGCGCCgGgCUCGUgGcCGACGCg-- -3'
miRNA:   3'- gCCGCGGgC-GAGCAgCaGCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 5771 0.67 0.352179
Target:  5'- aGGCgGUCCGCagGUCGgcguacgcgucgacCGGCACCCc -3'
miRNA:   3'- gCCG-CGGGCGagCAGCa-------------GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 6184 0.71 0.179956
Target:  5'- cCGGCGCaguuCCGCgCGUUccgCGGCGCCCUg -3'
miRNA:   3'- -GCCGCG----GGCGaGCAGca-GCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 7225 0.66 0.390514
Target:  5'- aCGGCGaCCGg-UGUCGUCGGCGacgaCCa -3'
miRNA:   3'- -GCCGCgGGCgaGCAGCAGCUGUg---GGa -5'
26283 3' -61.8 NC_005345.2 + 10145 0.66 0.40801
Target:  5'- gCGGCGgCCGCUCuG-CGga-GCGCCCg -3'
miRNA:   3'- -GCCGCgGGCGAG-CaGCagcUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 10741 0.68 0.275672
Target:  5'- -cGCGCUCGaugUCGUCGcCGACGCCg- -3'
miRNA:   3'- gcCGCGGGCg--AGCAGCaGCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 10976 0.68 0.275672
Target:  5'- aGGUGCCCG-UCGUaCGgaUCGGCgGCCCg -3'
miRNA:   3'- gCCGCGGGCgAGCA-GC--AGCUG-UGGGa -5'
26283 3' -61.8 NC_005345.2 + 12548 0.66 0.390514
Target:  5'- cCGGcCGCCaucugcauugauCGUUCGUgGUCGaACACCUc -3'
miRNA:   3'- -GCC-GCGG------------GCGAGCAgCAGC-UGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 12712 0.68 0.289284
Target:  5'- gGGCgaugcaGCCCGUguUCGcCGUCGAgauCGCCCa -3'
miRNA:   3'- gCCG------CGGGCG--AGCaGCAGCU---GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 13267 0.73 0.121225
Target:  5'- cCGGCGagcaGCUCGUCGgcgaCGACGCCCc -3'
miRNA:   3'- -GCCGCggg-CGAGCAGCa---GCUGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.