miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26284 3' -55.5 NC_005345.2 + 26633 0.66 0.707758
Target:  5'- gUCGGGCGCCcggCCGg---GCGACc -3'
miRNA:   3'- gGGCUCGCGGuuaGGCaagaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 21378 0.66 0.707758
Target:  5'- aCCGAgcuGCGCCcGUUCGUcCUGCaGCg -3'
miRNA:   3'- gGGCU---CGCGGuUAGGCAaGACGcUGa -5'
26284 3' -55.5 NC_005345.2 + 9675 0.66 0.707758
Target:  5'- aCCgCGAGCGCCg--CCGg-CUGCaGGCc -3'
miRNA:   3'- -GG-GCUCGCGGuuaGGCaaGACG-CUGa -5'
26284 3' -55.5 NC_005345.2 + 44750 0.66 0.707758
Target:  5'- uUCCGGGCcuuGUCGAUCgCGcUCaUGCGGCg -3'
miRNA:   3'- -GGGCUCG---CGGUUAG-GCaAG-ACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 30444 0.66 0.69697
Target:  5'- aCCGGGCacacccCCGAUCCGggcacgCUGCGcGCg -3'
miRNA:   3'- gGGCUCGc-----GGUUAGGCaa----GACGC-UGa -5'
26284 3' -55.5 NC_005345.2 + 38166 0.66 0.69697
Target:  5'- uUCGGGcCGCCGAUCCGUa---CGACg -3'
miRNA:   3'- gGGCUC-GCGGUUAGGCAagacGCUGa -5'
26284 3' -55.5 NC_005345.2 + 5142 0.66 0.69697
Target:  5'- -aUGAGCGCCGAcaCCGUgcacgaGCGACUc -3'
miRNA:   3'- ggGCUCGCGGUUa-GGCAaga---CGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 25010 0.66 0.686119
Target:  5'- gCCGcGGuCGCCGAggCGUUC-GCGACg -3'
miRNA:   3'- gGGC-UC-GCGGUUagGCAAGaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 23913 0.66 0.686119
Target:  5'- -aCGAGCGCCGAcgagCCGUcgUGCGugaGCUc -3'
miRNA:   3'- ggGCUCGCGGUUa---GGCAagACGC---UGA- -5'
26284 3' -55.5 NC_005345.2 + 12806 0.66 0.675216
Target:  5'- gCCCGAGCcgcucggcccGCCGGUUCGc-CUGCGcCg -3'
miRNA:   3'- -GGGCUCG----------CGGUUAGGCaaGACGCuGa -5'
26284 3' -55.5 NC_005345.2 + 43507 0.66 0.675216
Target:  5'- gCCGGGCgguGCCGAUCgGgUCgGCGAUc -3'
miRNA:   3'- gGGCUCG---CGGUUAGgCaAGaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 33436 0.66 0.67303
Target:  5'- uCCCGAGCGCCcgggGAUUCGccgaggaccugCaGCGGCa -3'
miRNA:   3'- -GGGCUCGCGG----UUAGGCaa---------GaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 5635 0.66 0.664272
Target:  5'- uCCgCGAGCGCCGGguucgCCGcgaccuugGCGGCg -3'
miRNA:   3'- -GG-GCUCGCGGUUa----GGCaaga----CGCUGa -5'
26284 3' -55.5 NC_005345.2 + 14970 0.66 0.664272
Target:  5'- aCCCGAGCGCCuugAAUCCc-UCgGCcgagGACUc -3'
miRNA:   3'- -GGGCUCGCGG---UUAGGcaAGaCG----CUGA- -5'
26284 3' -55.5 NC_005345.2 + 16050 0.66 0.664272
Target:  5'- gCCGAGCG-CGAUCCGggUCcggGCGGu- -3'
miRNA:   3'- gGGCUCGCgGUUAGGCa-AGa--CGCUga -5'
26284 3' -55.5 NC_005345.2 + 37697 0.66 0.664272
Target:  5'- gCCgUGGGcCGCCAGUCCugcgggaucGcgCUGCGGCg -3'
miRNA:   3'- -GG-GCUC-GCGGUUAGG---------CaaGACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 23564 0.66 0.664272
Target:  5'- aCCUGucgGCCGcGUCCGagCUGCGGCUg -3'
miRNA:   3'- -GGGCucgCGGU-UAGGCaaGACGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 12312 0.66 0.663176
Target:  5'- cCCCGAgugcgcgGCGCCGAUCgGUcguccCUGCaaGACg -3'
miRNA:   3'- -GGGCU-------CGCGGUUAGgCAa----GACG--CUGa -5'
26284 3' -55.5 NC_005345.2 + 24336 0.67 0.653298
Target:  5'- aCCCGAGCa-CGAUCCGgUCgccCGGCUg -3'
miRNA:   3'- -GGGCUCGcgGUUAGGCaAGac-GCUGA- -5'
26284 3' -55.5 NC_005345.2 + 42535 0.67 0.652199
Target:  5'- gCCGGGCgcaaccgccGCCGGUCCacagcucGUUCgccUGCGACa -3'
miRNA:   3'- gGGCUCG---------CGGUUAGG-------CAAG---ACGCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.