miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26285 5' -59.9 NC_005345.2 + 26020 1.1 0.000295
Target:  5'- cUGCACGGGACAGACCCGACUCGCCGCc -3'
miRNA:   3'- -ACGUGCCCUGUCUGGGCUGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 19002 0.78 0.075131
Target:  5'- gGCccgaGCGGGGCGGcGCCuCGACgUCGCCGCc -3'
miRNA:   3'- aCG----UGCCCUGUC-UGG-GCUG-AGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 22404 0.78 0.077258
Target:  5'- cUGUACGGGACGGGCCgGuucaUCGCUGUc -3'
miRNA:   3'- -ACGUGCCCUGUCUGGgCug--AGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 9022 0.77 0.079442
Target:  5'- gUGCGCGGGAuCAGAgCCGGgUCGgCGUg -3'
miRNA:   3'- -ACGUGCCCU-GUCUgGGCUgAGCgGCG- -5'
26285 5' -59.9 NC_005345.2 + 27817 0.77 0.086355
Target:  5'- cGCACGGGcgaGGACCCGACcgaGCUGUa -3'
miRNA:   3'- aCGUGCCCug-UCUGGGCUGag-CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 27126 0.77 0.091278
Target:  5'- gGC-CGGGACcguccggcGGGCCCGGCaUGCCGCc -3'
miRNA:   3'- aCGuGCCCUG--------UCUGGGCUGaGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 36345 0.76 0.093838
Target:  5'- aUGCA-GGuGAUcGACCCGACuuUCGCCGCg -3'
miRNA:   3'- -ACGUgCC-CUGuCUGGGCUG--AGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 35761 0.75 0.123444
Target:  5'- gGCAuccCGGGGCAgGACUCGAUUC-CCGCg -3'
miRNA:   3'- aCGU---GCCCUGU-CUGGGCUGAGcGGCG- -5'
26285 5' -59.9 NC_005345.2 + 26773 0.74 0.133897
Target:  5'- gGCGCGGGugcgGCGGAUCgUGGCcggCGCCGCg -3'
miRNA:   3'- aCGUGCCC----UGUCUGG-GCUGa--GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 18995 0.74 0.133897
Target:  5'- gGCcgGCGGGAC-GACCuCGACggguggcgCGCCGCc -3'
miRNA:   3'- aCG--UGCCCUGuCUGG-GCUGa-------GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 32953 0.74 0.13756
Target:  5'- aGCGCGaGGCGGACgCCGGCcgCGuCCGCg -3'
miRNA:   3'- aCGUGCcCUGUCUG-GGCUGa-GC-GGCG- -5'
26285 5' -59.9 NC_005345.2 + 41129 0.74 0.13756
Target:  5'- gGUACGGGGCuccGACUggCGGCUCGCCa- -3'
miRNA:   3'- aCGUGCCCUGu--CUGG--GCUGAGCGGcg -5'
26285 5' -59.9 NC_005345.2 + 41613 0.74 0.149104
Target:  5'- cUGguCGGGAuCAGcACCaCGAC-CGCCGCc -3'
miRNA:   3'- -ACguGCCCU-GUC-UGG-GCUGaGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 9868 0.73 0.153144
Target:  5'- gGaCGCGGucgaGCAGuCCCGACgCGCCGCg -3'
miRNA:   3'- aC-GUGCCc---UGUCuGGGCUGaGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 40750 0.73 0.165866
Target:  5'- cGUACuGGGGCGGACCguuCGGC-CGCCGg -3'
miRNA:   3'- aCGUG-CCCUGUCUGG---GCUGaGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 16024 0.72 0.179529
Target:  5'- cGCGaGGGugAGACCCGcgGCgaguacgCGCUGCg -3'
miRNA:   3'- aCGUgCCCugUCUGGGC--UGa------GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 5297 0.72 0.179529
Target:  5'- cUGCGgGGGGCGGGCCCauccgagcauGACgccggcgaagCGCUGCa -3'
miRNA:   3'- -ACGUgCCCUGUCUGGG----------CUGa---------GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 3901 0.72 0.183338
Target:  5'- aGgGCGGGGCGGACgucgucguacaggUCGgugucgucgagguGCUCGCCGCg -3'
miRNA:   3'- aCgUGCCCUGUCUG-------------GGC-------------UGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 6565 0.72 0.189184
Target:  5'- gGCuACGcGGGCGGACCCGugacgggcagUUCGCUGCu -3'
miRNA:   3'- aCG-UGC-CCUGUCUGGGCu---------GAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 22008 0.72 0.194181
Target:  5'- cGCACGGcGGCAuGCCgGGCcCGCCGg -3'
miRNA:   3'- aCGUGCC-CUGUcUGGgCUGaGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.