miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26285 5' -59.9 NC_005345.2 + 784 0.68 0.359197
Target:  5'- gGCGgGGGAugccgacCGGGCCCGcuuacaccuGCUCGCC-Cg -3'
miRNA:   3'- aCGUgCCCU-------GUCUGGGC---------UGAGCGGcG- -5'
26285 5' -59.9 NC_005345.2 + 1405 0.66 0.478544
Target:  5'- gUGaCGCGGGGCcagaGGAUCCc-CUCGUCGUc -3'
miRNA:   3'- -AC-GUGCCCUG----UCUGGGcuGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 1776 0.71 0.220924
Target:  5'- cGCGCGGGGuCAGGCagcACUCGCCa- -3'
miRNA:   3'- aCGUGCCCU-GUCUGggcUGAGCGGcg -5'
26285 5' -59.9 NC_005345.2 + 2036 0.71 0.226636
Target:  5'- cGUcgaGCGGGcccgGCGcGGCCCGGCggGCCGCg -3'
miRNA:   3'- aCG---UGCCC----UGU-CUGGGCUGagCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 2122 0.66 0.449421
Target:  5'- aGCuuuuCGGGGuuCGGGCCgCGGCU-GCUGCc -3'
miRNA:   3'- aCGu---GCCCU--GUCUGG-GCUGAgCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 3243 0.66 0.459022
Target:  5'- gGCA-GGcGAguGACaaCCGuCUCGCCGUg -3'
miRNA:   3'- aCGUgCC-CUguCUG--GGCuGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 3428 0.69 0.29011
Target:  5'- gGCGCGGcGGCGGGcggcgaugcgggcCCCGAgCUCG-CGCg -3'
miRNA:   3'- aCGUGCC-CUGUCU-------------GGGCU-GAGCgGCG- -5'
26285 5' -59.9 NC_005345.2 + 3758 0.66 0.439933
Target:  5'- cGCGCGuGGGCuuGGcacacCCCcACUCGCCGg -3'
miRNA:   3'- aCGUGC-CCUGu-CU-----GGGcUGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 3901 0.72 0.183338
Target:  5'- aGgGCGGGGCGGACgucgucguacaggUCGgugucgucgagguGCUCGCCGCg -3'
miRNA:   3'- aCgUGCCCUGUCUG-------------GGC-------------UGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 4250 0.66 0.439933
Target:  5'- cUGCggaGCGGGACgAGGCCaCG--UUGCUGCg -3'
miRNA:   3'- -ACG---UGCCCUG-UCUGG-GCugAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 4597 0.69 0.312666
Target:  5'- aGUGCGacuCGGACCCG-CUCGCgGCg -3'
miRNA:   3'- aCGUGCccuGUCUGGGCuGAGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 4643 0.67 0.385515
Target:  5'- cGCGgaucgGGGGCAGGCgugaagaCGACUCaCCGCg -3'
miRNA:   3'- aCGUg----CCCUGUCUGg------GCUGAGcGGCG- -5'
26285 5' -59.9 NC_005345.2 + 4767 0.67 0.394273
Target:  5'- cGuCAUGGu--GGGCCCGugccuuuccggGCUCGCCGCg -3'
miRNA:   3'- aC-GUGCCcugUCUGGGC-----------UGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 5207 0.68 0.351796
Target:  5'- gGCACGGcc--GGCCCGGCgcuacaCGCCGUc -3'
miRNA:   3'- aCGUGCCcuguCUGGGCUGa-----GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 5297 0.72 0.179529
Target:  5'- cUGCGgGGGGCGGGCCCauccgagcauGACgccggcgaagCGCUGCa -3'
miRNA:   3'- -ACGUgCCCUGUCUGGG----------CUGa---------GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 5654 0.68 0.331025
Target:  5'- gGCACcgcccGGCGGGCCCGgaccgagccgaccgcGCUgCGCCGCg -3'
miRNA:   3'- aCGUGcc---CUGUCUGGGC---------------UGA-GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 5923 0.66 0.459022
Target:  5'- cGC-CGGGACcgguGACCUguggGugUgGCUGCg -3'
miRNA:   3'- aCGuGCCCUGu---CUGGG----CugAgCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 6482 0.7 0.244525
Target:  5'- cUGUACGGcGGCGaGCCCGagGCguggaCGCCGCa -3'
miRNA:   3'- -ACGUGCC-CUGUcUGGGC--UGa----GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 6565 0.72 0.189184
Target:  5'- gGCuACGcGGGCGGACCCGugacgggcagUUCGCUGCu -3'
miRNA:   3'- aCG-UGC-CCUGUCUGGGCu---------GAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 6657 0.66 0.445613
Target:  5'- gGCACGGGcgaacgugGCGaucuccucgacgacGGCCuCGGCgucgauaUCGCCGCg -3'
miRNA:   3'- aCGUGCCC--------UGU--------------CUGG-GCUG-------AGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.