Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26285 | 5' | -59.9 | NC_005345.2 | + | 22404 | 0.78 | 0.077258 |
Target: 5'- cUGUACGGGACGGGCCgGuucaUCGCUGUc -3' miRNA: 3'- -ACGUGCCCUGUCUGGgCug--AGCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 2036 | 0.71 | 0.226636 |
Target: 5'- cGUcgaGCGGGcccgGCGcGGCCCGGCggGCCGCg -3' miRNA: 3'- aCG---UGCCC----UGU-CUGGGCUGagCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 8381 | 0.71 | 0.232472 |
Target: 5'- cGCGcCGGccGACcGGCCCGACgaGCCGCu -3' miRNA: 3'- aCGU-GCC--CUGuCUGGGCUGagCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 41481 | 0.65 | 0.48448 |
Target: 5'- cGCugGGGGCuccccuucacagcGGCC--GCUCuGCCGCa -3' miRNA: 3'- aCGugCCCUGu------------CUGGgcUGAG-CGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 26773 | 0.74 | 0.133897 |
Target: 5'- gGCGCGGGugcgGCGGAUCgUGGCcggCGCCGCg -3' miRNA: 3'- aCGUGCCC----UGUCUGG-GCUGa--GCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 18995 | 0.74 | 0.133897 |
Target: 5'- gGCcgGCGGGAC-GACCuCGACggguggcgCGCCGCc -3' miRNA: 3'- aCG--UGCCCUGuCUGG-GCUGa-------GCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 41613 | 0.74 | 0.149104 |
Target: 5'- cUGguCGGGAuCAGcACCaCGAC-CGCCGCc -3' miRNA: 3'- -ACguGCCCU-GUC-UGG-GCUGaGCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 40750 | 0.73 | 0.165866 |
Target: 5'- cGUACuGGGGCGGACCguuCGGC-CGCCGg -3' miRNA: 3'- aCGUG-CCCUGUCUGG---GCUGaGCGGCg -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 43975 | 0.72 | 0.204521 |
Target: 5'- aGCcCGGcGGCucGCCCGACUCGUCGg -3' miRNA: 3'- aCGuGCC-CUGucUGGGCUGAGCGGCg -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 7157 | 0.71 | 0.226636 |
Target: 5'- gGgACGGGuCGGACCCG-CU-GUCGCa -3' miRNA: 3'- aCgUGCCCuGUCUGGGCuGAgCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 37095 | 0.71 | 0.215335 |
Target: 5'- aGCGCGGGcugaaccaggACGcGAUCCGgcaGCUCGUCGCc -3' miRNA: 3'- aCGUGCCC----------UGU-CUGGGC---UGAGCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 22008 | 0.72 | 0.194181 |
Target: 5'- cGCACGGcGGCAuGCCgGGCcCGCCGg -3' miRNA: 3'- aCGUGCC-CUGUcUGGgCUGaGCGGCg -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 27817 | 0.77 | 0.086355 |
Target: 5'- cGCACGGGcgaGGACCCGACcgaGCUGUa -3' miRNA: 3'- aCGUGCCCug-UCUGGGCUGag-CGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 47953 | 0.71 | 0.220924 |
Target: 5'- gGCccGCGGGcCGGacugccgagccGCCCGugUgCGCCGCg -3' miRNA: 3'- aCG--UGCCCuGUC-----------UGGGCugA-GCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 36345 | 0.76 | 0.093838 |
Target: 5'- aUGCA-GGuGAUcGACCCGACuuUCGCCGCg -3' miRNA: 3'- -ACGUgCC-CUGuCUGGGCUG--AGCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 16024 | 0.72 | 0.179529 |
Target: 5'- cGCGaGGGugAGACCCGcgGCgaguacgCGCUGCg -3' miRNA: 3'- aCGUgCCCugUCUGGGC--UGa------GCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 22432 | 0.71 | 0.220924 |
Target: 5'- -uCACGGGGCGGACguUCGGCgacaugccaCGCCGCc -3' miRNA: 3'- acGUGCCCUGUCUG--GGCUGa--------GCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 8051 | 0.71 | 0.232472 |
Target: 5'- cUGCACGaGcuGCAGAUCaaGCUCGCCGCc -3' miRNA: 3'- -ACGUGCcC--UGUCUGGgcUGAGCGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 35761 | 0.75 | 0.123444 |
Target: 5'- gGCAuccCGGGGCAgGACUCGAUUC-CCGCg -3' miRNA: 3'- aCGU---GCCCUGU-CUGGGCUGAGcGGCG- -5' |
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26285 | 5' | -59.9 | NC_005345.2 | + | 41129 | 0.74 | 0.13756 |
Target: 5'- gGUACGGGGCuccGACUggCGGCUCGCCa- -3' miRNA: 3'- aCGUGCCCUGu--CUGG--GCUGAGCGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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