miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26286 5' -60.8 NC_005345.2 + 25431 1.01 0.00101
Target:  5'- cCCGCCAGGaAGCGAGCGCAGAGCCCCg -3'
miRNA:   3'- -GGCGGUCUcUCGCUCGCGUCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 11614 0.77 0.072734
Target:  5'- gCCGCUggcgggagugggcGGAGAGCGAGCGCAccGCgCCg -3'
miRNA:   3'- -GGCGG-------------UCUCUCGCUCGCGUcuCGgGG- -5'
26286 5' -60.8 NC_005345.2 + 34137 0.75 0.093617
Target:  5'- -gGCCAGAGAuCGAgugGCGCGGcggcGGCCCCg -3'
miRNA:   3'- ggCGGUCUCUcGCU---CGCGUC----UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 28542 0.75 0.101671
Target:  5'- gUCGCC-GAGAcuuGCGAGCGCccgccGGCCCCg -3'
miRNA:   3'- -GGCGGuCUCU---CGCUCGCGuc---UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 7813 0.75 0.101671
Target:  5'- aCCGCaagCGGGuGAGCGAGaCGCAGGGCgCUCg -3'
miRNA:   3'- -GGCG---GUCU-CUCGCUC-GCGUCUCG-GGG- -5'
26286 5' -60.8 NC_005345.2 + 31462 0.75 0.105649
Target:  5'- gCGCCGGGGugcgggugugaggcgGGCGAGCGCGGcguaGGCgCCg -3'
miRNA:   3'- gGCGGUCUC---------------UCGCUCGCGUC----UCGgGG- -5'
26286 5' -60.8 NC_005345.2 + 11338 0.74 0.116243
Target:  5'- gCGCCGcGAGcAGUGAGCggcaccgccaacgGCAGcAGCCCCg -3'
miRNA:   3'- gGCGGU-CUC-UCGCUCG-------------CGUC-UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 30107 0.74 0.116559
Target:  5'- aCgGCCAGGGcGGCGAG-GCGGAGCagcggCCCg -3'
miRNA:   3'- -GgCGGUCUC-UCGCUCgCGUCUCG-----GGG- -5'
26286 5' -60.8 NC_005345.2 + 34903 0.74 0.116559
Target:  5'- gCCGCUgcgggugggAGAGGGCGuGCGCAGGGCg-- -3'
miRNA:   3'- -GGCGG---------UCUCUCGCuCGCGUCUCGggg -5'
26286 5' -60.8 NC_005345.2 + 22552 0.74 0.119772
Target:  5'- gCGCCGc--AGCGAGCGCGagcaccgauucGAGCCCCu -3'
miRNA:   3'- gGCGGUcucUCGCUCGCGU-----------CUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 45273 0.74 0.126445
Target:  5'- gUCGgCGGAGAGC-AGCGCAGGGaCgCCg -3'
miRNA:   3'- -GGCgGUCUCUCGcUCGCGUCUC-GgGG- -5'
26286 5' -60.8 NC_005345.2 + 27391 0.74 0.126445
Target:  5'- cCCGCCAGcGAGC-AGCaCAGGGgCCCu -3'
miRNA:   3'- -GGCGGUCuCUCGcUCGcGUCUCgGGG- -5'
26286 5' -60.8 NC_005345.2 + 39409 0.73 0.140834
Target:  5'- gUGCCcGGGAGCGucGGCGCGGucgcGGCCCg -3'
miRNA:   3'- gGCGGuCUCUCGC--UCGCGUC----UCGGGg -5'
26286 5' -60.8 NC_005345.2 + 19347 0.72 0.15671
Target:  5'- cUCGCCGG-GGGCGAGCGCGuAGUCg- -3'
miRNA:   3'- -GGCGGUCuCUCGCUCGCGUcUCGGgg -5'
26286 5' -60.8 NC_005345.2 + 8006 0.72 0.160924
Target:  5'- uCUGCaCAGuG-GCGAGcCGCcagucGGAGCCCCg -3'
miRNA:   3'- -GGCG-GUCuCuCGCUC-GCG-----UCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 33361 0.72 0.174186
Target:  5'- gCGCgAGAGGgGUGGGgGCGGuggcgcGGCCCCg -3'
miRNA:   3'- gGCGgUCUCU-CGCUCgCGUC------UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 15830 0.71 0.188413
Target:  5'- aCCGCguG-GAGaUGGGCGCGG-GCCCg -3'
miRNA:   3'- -GGCGguCuCUC-GCUCGCGUCuCGGGg -5'
26286 5' -60.8 NC_005345.2 + 18014 0.71 0.188413
Target:  5'- aCCGCCugucGGAcgccGGGCGAGCGCAGgaacgcGGCCa- -3'
miRNA:   3'- -GGCGG----UCU----CUCGCUCGCGUC------UCGGgg -5'
26286 5' -60.8 NC_005345.2 + 8254 0.7 0.214397
Target:  5'- gUCGCCGG-GuuCGAGCGCGGGGUUCa -3'
miRNA:   3'- -GGCGGUCuCucGCUCGCGUCUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 48841 0.7 0.214397
Target:  5'- cCCGCCccuuccGGGGGGCGGG-GCGGugcugcguGCCCUa -3'
miRNA:   3'- -GGCGG------UCUCUCGCUCgCGUCu-------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.