miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26286 5' -60.8 NC_005345.2 + 11614 0.77 0.072734
Target:  5'- gCCGCUggcgggagugggcGGAGAGCGAGCGCAccGCgCCg -3'
miRNA:   3'- -GGCGG-------------UCUCUCGCUCGCGUcuCGgGG- -5'
26286 5' -60.8 NC_005345.2 + 17846 0.67 0.347537
Target:  5'- gCCGCCGGGccccGGCGAcauccccccguggcGCGCAcccGCCCCc -3'
miRNA:   3'- -GGCGGUCUc---UCGCU--------------CGCGUcu-CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 13606 0.67 0.349964
Target:  5'- cCCGCC----GGCG-GUGCccGAGCCCCg -3'
miRNA:   3'- -GGCGGucucUCGCuCGCGu-CUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 30048 0.65 0.434751
Target:  5'- aCGCguGGGccgacgacaccgacGGCGAGCucaucggcgaGCAcGGCCCCg -3'
miRNA:   3'- gGCGguCUC--------------UCGCUCG----------CGUcUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 14505 0.7 0.225625
Target:  5'- aCgGCCGagaccGGGAGC-AGCGCAccGCCCCg -3'
miRNA:   3'- -GgCGGU-----CUCUCGcUCGCGUcuCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 12529 0.7 0.237347
Target:  5'- cUCGCgCAGcucgcGGAGCGGGCGCAGcGCUg- -3'
miRNA:   3'- -GGCG-GUC-----UCUCGCUCGCGUCuCGGgg -5'
26286 5' -60.8 NC_005345.2 + 5256 0.7 0.243397
Target:  5'- gCCGCCGuGGcgaugcAGCGGGacgcgcuccgcCGCGGAGUCCCg -3'
miRNA:   3'- -GGCGGUcUC------UCGCUC-----------GCGUCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 27151 0.7 0.243397
Target:  5'- gCUGCCcGAG-GCGcuGCGCGGcGUCCCg -3'
miRNA:   3'- -GGCGGuCUCuCGCu-CGCGUCuCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 14808 0.68 0.318594
Target:  5'- aCGUC-GAGcGGCGGGCGCGGGuguggucgacGCCCg -3'
miRNA:   3'- gGCGGuCUC-UCGCUCGCGUCU----------CGGGg -5'
26286 5' -60.8 NC_005345.2 + 3163 0.67 0.34192
Target:  5'- cCCGCCaccacaccagAGAGAaaGCGAgGCGC-GAGCCa- -3'
miRNA:   3'- -GGCGG----------UCUCU--CGCU-CGCGuCUCGGgg -5'
26286 5' -60.8 NC_005345.2 + 19924 0.67 0.33401
Target:  5'- aCGCaAGAGcAGCGAGacgacgagcaGCAGcgcGCCCCg -3'
miRNA:   3'- gGCGgUCUC-UCGCUCg---------CGUCu--CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 37564 0.68 0.289384
Target:  5'- uCgGCCcGAG-GCGGGCGCAGgcgGGCUgCa -3'
miRNA:   3'- -GgCGGuCUCuCGCUCGCGUC---UCGGgG- -5'
26286 5' -60.8 NC_005345.2 + 7813 0.75 0.101671
Target:  5'- aCCGCaagCGGGuGAGCGAGaCGCAGGGCgCUCg -3'
miRNA:   3'- -GGCG---GUCU-CUCGCUC-GCGUCUCG-GGG- -5'
26286 5' -60.8 NC_005345.2 + 20855 0.67 0.33401
Target:  5'- -aGUCGGAGAgaguGCGggagguAGCGCGcGAGCCCg -3'
miRNA:   3'- ggCGGUCUCU----CGC------UCGCGU-CUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 11338 0.74 0.116243
Target:  5'- gCGCCGcGAGcAGUGAGCggcaccgccaacgGCAGcAGCCCCg -3'
miRNA:   3'- gGCGGU-CUC-UCGCUCG-------------CGUC-UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 39761 0.68 0.28728
Target:  5'- gCCGUCgacgacggcgaggaGGAGuGGCGGGUGUGGAcgcuGCCCCu -3'
miRNA:   3'- -GGCGG--------------UCUC-UCGCUCGCGUCU----CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 18933 0.67 0.33401
Target:  5'- aCCGCCGGAuGcGCGAucgucGCccgGCAGGGUCCg -3'
miRNA:   3'- -GGCGGUCU-CuCGCU-----CG---CGUCUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 15228 0.67 0.349964
Target:  5'- aCgGCCGGAcGGGUGuaGGacgugGCAGAGCuCCCa -3'
miRNA:   3'- -GgCGGUCU-CUCGC--UCg----CGUCUCG-GGG- -5'
26286 5' -60.8 NC_005345.2 + 48841 0.7 0.214397
Target:  5'- cCCGCCccuuccGGGGGGCGGG-GCGGugcugcguGCCCUa -3'
miRNA:   3'- -GGCGG------UCUCUCGCUCgCGUCu-------CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 12644 0.7 0.243397
Target:  5'- -gGCCucGGAGCGGGCGCAcuggcugaacuGcGCCCCc -3'
miRNA:   3'- ggCGGucUCUCGCUCGCGU-----------CuCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.