miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26286 5' -60.8 NC_005345.2 + 1162 0.7 0.225625
Target:  5'- gCCGCgaGGGGAGCGuGCGCGGcgcacacgggcGGCUCg -3'
miRNA:   3'- -GGCGg-UCUCUCGCuCGCGUC-----------UCGGGg -5'
26286 5' -60.8 NC_005345.2 + 1767 0.66 0.40996
Target:  5'- aCCGUCGGccauGGGgGAGgGCAG-GCCgCu -3'
miRNA:   3'- -GGCGGUCu---CUCgCUCgCGUCuCGGgG- -5'
26286 5' -60.8 NC_005345.2 + 2753 0.67 0.366454
Target:  5'- cCCGCauguGGAGcGCGccacGCGCGGcGGCCUCg -3'
miRNA:   3'- -GGCGg---UCUCuCGCu---CGCGUC-UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 3044 0.67 0.366454
Target:  5'- cCCGaCAGGGucgccGCGuggauguccGCGCAG-GCCCCg -3'
miRNA:   3'- -GGCgGUCUCu----CGCu--------CGCGUCuCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 3163 0.67 0.34192
Target:  5'- cCCGCCaccacaccagAGAGAaaGCGAgGCGC-GAGCCa- -3'
miRNA:   3'- -GGCGG----------UCUCU--CGCU-CGCGuCUCGGgg -5'
26286 5' -60.8 NC_005345.2 + 3170 0.66 0.40996
Target:  5'- cUCGUCGGGGuGcCGGGUcgGC-GAGCCCUg -3'
miRNA:   3'- -GGCGGUCUCuC-GCUCG--CGuCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 3431 0.66 0.401004
Target:  5'- gCGgCGGcGGGCG-GCGaugcGGGCCCCg -3'
miRNA:   3'- gGCgGUCuCUCGCuCGCgu--CUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 5256 0.7 0.243397
Target:  5'- gCCGCCGuGGcgaugcAGCGGGacgcgcuccgcCGCGGAGUCCCg -3'
miRNA:   3'- -GGCGGUcUC------UCGCUC-----------GCGUCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 7652 0.67 0.374897
Target:  5'- gCGUgCGGcAGAGCGGcCGCugugaaggGGAGCCCCc -3'
miRNA:   3'- gGCG-GUC-UCUCGCUcGCG--------UCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 7813 0.75 0.101671
Target:  5'- aCCGCaagCGGGuGAGCGAGaCGCAGGGCgCUCg -3'
miRNA:   3'- -GGCG---GUCU-CUCGCUC-GCGUCUCG-GGG- -5'
26286 5' -60.8 NC_005345.2 + 8006 0.72 0.160924
Target:  5'- uCUGCaCAGuG-GCGAGcCGCcagucGGAGCCCCg -3'
miRNA:   3'- -GGCG-GUCuCuCGCUC-GCG-----UCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 8254 0.7 0.214397
Target:  5'- gUCGCCGG-GuuCGAGCGCGGGGUUCa -3'
miRNA:   3'- -GGCGGUCuCucGCUCGCGUCUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 8773 0.66 0.401004
Target:  5'- gCUGCgCAG-GA-UGAGCGCGGugaucGCCCCc -3'
miRNA:   3'- -GGCG-GUCuCUcGCUCGCGUCu----CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 8935 0.68 0.326234
Target:  5'- gCCGCCcccGuGGGCGGGCuGCGGGuGCUCg -3'
miRNA:   3'- -GGCGGu--CuCUCGCUCG-CGUCU-CGGGg -5'
26286 5' -60.8 NC_005345.2 + 9725 0.68 0.30299
Target:  5'- gUCGCCGGGgucGAGCGGGUcggccucgaugcuGCGGuuCCCCu -3'
miRNA:   3'- -GGCGGUCU---CUCGCUCG-------------CGUCucGGGG- -5'
26286 5' -60.8 NC_005345.2 + 10007 0.67 0.374897
Target:  5'- gCGCCGGuGAGCGGGaGC-GAcUCCCa -3'
miRNA:   3'- gGCGGUCuCUCGCUCgCGuCUcGGGG- -5'
26286 5' -60.8 NC_005345.2 + 10660 0.67 0.374897
Target:  5'- aCCGCggacCGGuGGGGCGcGGCGCGGGaaguGCCCg -3'
miRNA:   3'- -GGCG----GUC-UCUCGC-UCGCGUCU----CGGGg -5'
26286 5' -60.8 NC_005345.2 + 11338 0.74 0.116243
Target:  5'- gCGCCGcGAGcAGUGAGCggcaccgccaacgGCAGcAGCCCCg -3'
miRNA:   3'- gGCGGU-CUC-UCGCUCG-------------CGUC-UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 11614 0.77 0.072734
Target:  5'- gCCGCUggcgggagugggcGGAGAGCGAGCGCAccGCgCCg -3'
miRNA:   3'- -GGCGG-------------UCUCUCGCUCGCGUcuCGgGG- -5'
26286 5' -60.8 NC_005345.2 + 12151 0.66 0.40996
Target:  5'- aUGCCgAGGGAGCu-GCGCacGGGGCUCg -3'
miRNA:   3'- gGCGG-UCUCUCGcuCGCG--UCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.