miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 5' -54.5 NC_005345.2 + 25226 1.15 0.000429
Target:  5'- cGGUCACCGGGUGCAGCUCGUAGAACCg -3'
miRNA:   3'- -CCAGUGGCCCACGUCGAGCAUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 27557 0.78 0.164587
Target:  5'- aGUC-CCGGGUGCcGUUCGgGGGGCCg -3'
miRNA:   3'- cCAGuGGCCCACGuCGAGCaUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 40752 0.77 0.215601
Target:  5'- cGUCgACCGGcaGCGGCUCGUcGGGCCg -3'
miRNA:   3'- cCAG-UGGCCcaCGUCGAGCAuCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 42582 0.77 0.215601
Target:  5'- gGGUCGCCGGGcgGCaggaucgaguacAGCUCGc-GAGCCu -3'
miRNA:   3'- -CCAGUGGCCCa-CG------------UCGAGCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 13045 0.76 0.239547
Target:  5'- cGGaUCACCGGcaGCGGCaUCGUGuGGACCg -3'
miRNA:   3'- -CC-AGUGGCCcaCGUCG-AGCAU-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 45779 0.74 0.309121
Target:  5'- -cUCGCCGcc--CAGCUCGUAGAACCa -3'
miRNA:   3'- ccAGUGGCccacGUCGAGCAUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 10623 0.73 0.34098
Target:  5'- cGGUCGgcCCGGGUcgaGCAGCacgCGUgacucaGGGACCg -3'
miRNA:   3'- -CCAGU--GGCCCA---CGUCGa--GCA------UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 12508 0.73 0.357778
Target:  5'- uGGUCGCaguacgCGGGUgaucucgcGCAGCUCGcGGAGCg -3'
miRNA:   3'- -CCAGUG------GCCCA--------CGUCGAGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 17739 0.72 0.390354
Target:  5'- -aUCGCCGGGUGCGcaCUCGcccucacccucaccUAGGACCc -3'
miRNA:   3'- ccAGUGGCCCACGUc-GAGC--------------AUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 18562 0.72 0.402251
Target:  5'- -cUCGCCGGGUGCGcGCccagCGUcgGGAACa -3'
miRNA:   3'- ccAGUGGCCCACGU-CGa---GCA--UCUUGg -5'
26287 5' -54.5 NC_005345.2 + 22858 0.72 0.402251
Target:  5'- cGGUCGCCGGGUcGguGCgcuUCGc-GAACUu -3'
miRNA:   3'- -CCAGUGGCCCA-CguCG---AGCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 40193 0.71 0.450077
Target:  5'- cGagGCCGGcGUGCAGCUCGgc-AGCUa -3'
miRNA:   3'- cCagUGGCC-CACGUCGAGCaucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 36314 0.71 0.450077
Target:  5'- cGGUCcucGCCGGuGaUGCGGCgcaGgcGAACCg -3'
miRNA:   3'- -CCAG---UGGCC-C-ACGUCGag-CauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 33254 0.71 0.450077
Target:  5'- cGUCACgGGGUaCAGCUCGgu--GCCc -3'
miRNA:   3'- cCAGUGgCCCAcGUCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 31454 0.71 0.460014
Target:  5'- cGUCGCCGaGGccggcGCGGUUCGUAcGGAUCg -3'
miRNA:   3'- cCAGUGGC-CCa----CGUCGAGCAU-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 21320 0.71 0.460014
Target:  5'- --aCACCGGGUaCAGCUCGgucGGGuCCu -3'
miRNA:   3'- ccaGUGGCCCAcGUCGAGCa--UCUuGG- -5'
26287 5' -54.5 NC_005345.2 + 31308 0.71 0.460014
Target:  5'- uGUCGCCGGGgcccgGCGGC-CGggcgGGAaggggcacGCCg -3'
miRNA:   3'- cCAGUGGCCCa----CGUCGaGCa---UCU--------UGG- -5'
26287 5' -54.5 NC_005345.2 + 35001 0.7 0.500868
Target:  5'- cGG-CGCCGGGgcgcUGCGGCggccaCGUGGGGgCg -3'
miRNA:   3'- -CCaGUGGCCC----ACGUCGa----GCAUCUUgG- -5'
26287 5' -54.5 NC_005345.2 + 31964 0.7 0.500868
Target:  5'- gGGUg--CGGGUGCGGCUgGUAcGGCCu -3'
miRNA:   3'- -CCAgugGCCCACGUCGAgCAUcUUGG- -5'
26287 5' -54.5 NC_005345.2 + 45223 0.7 0.521889
Target:  5'- cGGUCACgGgGGUGCGG-UCGUc-AGCCa -3'
miRNA:   3'- -CCAGUGgC-CCACGUCgAGCAucUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.