miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 5' -54.5 NC_005345.2 + 2799 0.66 0.72904
Target:  5'- cGG-CGCCGGcGUGC-GCUCG-AucGCCu -3'
miRNA:   3'- -CCaGUGGCC-CACGuCGAGCaUcuUGG- -5'
26287 5' -54.5 NC_005345.2 + 3474 0.66 0.750085
Target:  5'- cGGUCGcgauCCGGGUGCAcuGCccggUCGUcgcaggcgAGGACg -3'
miRNA:   3'- -CCAGU----GGCCCACGU--CG----AGCA--------UCUUGg -5'
26287 5' -54.5 NC_005345.2 + 4269 0.66 0.760433
Target:  5'- --aCACCGGcGgugcggGCAGCUCGggcucGGGCUg -3'
miRNA:   3'- ccaGUGGCC-Ca-----CGUCGAGCau---CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 5935 0.68 0.597714
Target:  5'- gGGUCGCCGuGGUcguucucaggGaCAGCggCGUGGGgaaACCa -3'
miRNA:   3'- -CCAGUGGC-CCA----------C-GUCGa-GCAUCU---UGG- -5'
26287 5' -54.5 NC_005345.2 + 6005 0.66 0.718365
Target:  5'- --gUugCGGGUGCAGUUcuccggccggcCGUuGGGCCa -3'
miRNA:   3'- ccaGugGCCCACGUCGA-----------GCAuCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 8358 0.69 0.554027
Target:  5'- cGGUCGUCGuGaGUGuCGGCgaggUGUGGAACCg -3'
miRNA:   3'- -CCAGUGGC-C-CAC-GUCGa---GCAUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 8949 0.66 0.72904
Target:  5'- cGGgCugCGGGUGCucgGGCUCG----ACCu -3'
miRNA:   3'- -CCaGugGCCCACG---UCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 9292 0.69 0.564875
Target:  5'- cGGUCaggauguccuGCCaGGUGCGGC-CGgccGAGCCc -3'
miRNA:   3'- -CCAG----------UGGcCCACGUCGaGCau-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 9724 0.68 0.641866
Target:  5'- cGUCGCCGGGgucgaGCGGgUCGgccucGAugCu -3'
miRNA:   3'- cCAGUGGCCCa----CGUCgAGCau---CUugG- -5'
26287 5' -54.5 NC_005345.2 + 10252 0.68 0.641866
Target:  5'- --aCACCGGG-GCAGCguUCGUucacGCCg -3'
miRNA:   3'- ccaGUGGCCCaCGUCG--AGCAucu-UGG- -5'
26287 5' -54.5 NC_005345.2 + 10623 0.73 0.34098
Target:  5'- cGGUCGgcCCGGGUcgaGCAGCacgCGUgacucaGGGACCg -3'
miRNA:   3'- -CCAGU--GGCCCA---CGUCGa--GCA------UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 11113 0.66 0.750085
Target:  5'- gGGUCGCCGc--GCAGCUCaccgacgggcuuGUgccGGGGCCg -3'
miRNA:   3'- -CCAGUGGCccaCGUCGAG------------CA---UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 12439 0.7 0.521889
Target:  5'- cGUCGCgCGGGcuaccucgcGCAGCUCGcGGGGCa -3'
miRNA:   3'- cCAGUG-GCCCa--------CGUCGAGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 12508 0.73 0.357778
Target:  5'- uGGUCGCaguacgCGGGUgaucucgcGCAGCUCGcGGAGCg -3'
miRNA:   3'- -CCAGUG------GCCCA--------CGUCGAGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 13045 0.76 0.239547
Target:  5'- cGGaUCACCGGcaGCGGCaUCGUGuGGACCg -3'
miRNA:   3'- -CC-AGUGGCCcaCGUCG-AGCAU-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 13486 0.67 0.707604
Target:  5'- cGG-CACCGcgucGGUGCGGUggcgCGgcGAGCa -3'
miRNA:   3'- -CCaGUGGC----CCACGUCGa---GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 14892 0.68 0.641866
Target:  5'- cGGUCAa-GGGU-CAGgUCG-AGGACCg -3'
miRNA:   3'- -CCAGUggCCCAcGUCgAGCaUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 15223 0.68 0.607628
Target:  5'- cGGUUACggccggaCGGGUGUAGgaCGUggcAGAGCUc -3'
miRNA:   3'- -CCAGUG-------GCCCACGUCgaGCA---UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 17739 0.72 0.390354
Target:  5'- -aUCGCCGGGUGCGcaCUCGcccucacccucaccUAGGACCc -3'
miRNA:   3'- ccAGUGGCCCACGUc-GAGC--------------AUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 18246 0.66 0.760433
Target:  5'- uGGUC-CC-GGUGCuGCUCGcc-GGCCg -3'
miRNA:   3'- -CCAGuGGcCCACGuCGAGCaucUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.