miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 5' -54.5 NC_005345.2 + 13045 0.76 0.239547
Target:  5'- cGGaUCACCGGcaGCGGCaUCGUGuGGACCg -3'
miRNA:   3'- -CC-AGUGGCCcaCGUCG-AGCAU-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 34841 0.67 0.68587
Target:  5'- -aUCACCGGGaucGCGgcGCUCGU--GACCc -3'
miRNA:   3'- ccAGUGGCCCa--CGU--CGAGCAucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 13486 0.67 0.707604
Target:  5'- cGG-CACCGcgucGGUGCGGUggcgCGgcGAGCa -3'
miRNA:   3'- -CCaGUGGC----CCACGUCGa---GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 18246 0.66 0.760433
Target:  5'- uGGUC-CC-GGUGCuGCUCGcc-GGCCg -3'
miRNA:   3'- -CCAGuGGcCCACGuCGAGCaucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 18562 0.72 0.402251
Target:  5'- -cUCGCCGGGUGCGcGCccagCGUcgGGAACa -3'
miRNA:   3'- ccAGUGGCCCACGU-CGa---GCA--UCUUGg -5'
26287 5' -54.5 NC_005345.2 + 40193 0.71 0.450077
Target:  5'- cGagGCCGGcGUGCAGCUCGgc-AGCUa -3'
miRNA:   3'- cCagUGGCC-CACGUCGAGCaucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 12439 0.7 0.521889
Target:  5'- cGUCGCgCGGGcuaccucgcGCAGCUCGcGGGGCa -3'
miRNA:   3'- cCAGUG-GCCCa--------CGUCGAGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 25681 0.7 0.532527
Target:  5'- cGGUgCACCGGcUGCucgcGCUCGgcGuGACCg -3'
miRNA:   3'- -CCA-GUGGCCcACGu---CGAGCauC-UUGG- -5'
26287 5' -54.5 NC_005345.2 + 39591 0.68 0.597714
Target:  5'- aGGUgCGCgGGGacuacgagggGCAGCUCGgcguguGGACCc -3'
miRNA:   3'- -CCA-GUGgCCCa---------CGUCGAGCau----CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 28111 0.67 0.68587
Target:  5'- cGGUCGCCGGcGcGCGuGC-CGaGGAACg -3'
miRNA:   3'- -CCAGUGGCC-CaCGU-CGaGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 38906 0.68 0.619768
Target:  5'- cGG-CGcCCGGGUgaccGCGGggCGUGGAACUu -3'
miRNA:   3'- -CCaGU-GGCCCA----CGUCgaGCAUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 36073 0.69 0.575777
Target:  5'- aGGUC-CCGGGgaagauGCUCGgcGGGCUg -3'
miRNA:   3'- -CCAGuGGCCCacgu--CGAGCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 10623 0.73 0.34098
Target:  5'- cGGUCGgcCCGGGUcgaGCAGCacgCGUgacucaGGGACCg -3'
miRNA:   3'- -CCAGU--GGCCCA---CGUCGa--GCA------UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 10252 0.68 0.641866
Target:  5'- --aCACCGGG-GCAGCguUCGUucacGCCg -3'
miRNA:   3'- ccaGUGGCCCaCGUCG--AGCAucu-UGG- -5'
26287 5' -54.5 NC_005345.2 + 12508 0.73 0.357778
Target:  5'- uGGUCGCaguacgCGGGUgaucucgcGCAGCUCGcGGAGCg -3'
miRNA:   3'- -CCAGUG------GCCCA--------CGUCGAGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 26766 0.69 0.543242
Target:  5'- aGUCcccgGCgCGGGUGCGGCggaUCGUGGccggcGCCg -3'
miRNA:   3'- cCAG----UG-GCCCACGUCG---AGCAUCu----UGG- -5'
26287 5' -54.5 NC_005345.2 + 30701 0.68 0.641866
Target:  5'- cGG-CugCGGGUggccGCGGUgaUCGgcgAGGACCu -3'
miRNA:   3'- -CCaGugGCCCA----CGUCG--AGCa--UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 34210 0.67 0.696768
Target:  5'- cGUCACCauGGGgcaGCAGUUCGcccGGGGCg -3'
miRNA:   3'- cCAGUGG--CCCa--CGUCGAGCa--UCUUGg -5'
26287 5' -54.5 NC_005345.2 + 17739 0.72 0.390354
Target:  5'- -aUCGCCGGGUGCGcaCUCGcccucacccucaccUAGGACCc -3'
miRNA:   3'- ccAGUGGCCCACGUc-GAGC--------------AUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 31454 0.71 0.460014
Target:  5'- cGUCGCCGaGGccggcGCGGUUCGUAcGGAUCg -3'
miRNA:   3'- cCAGUGGC-CCa----CGUCGAGCAU-CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.