miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 3' -64 NC_005345.2 + 2704 0.66 0.315399
Target:  5'- uGGGUGUCGGcgGCGCcgaugucUCCCGCccGcCCGg -3'
miRNA:   3'- gCUCGCGGCCa-CGCG-------AGGGCG--CaGGC- -5'
26289 3' -64 NC_005345.2 + 9611 0.66 0.308143
Target:  5'- gCGGG-GCCGGUGCacgaccuGCUCgaucggCCGgGUCCa -3'
miRNA:   3'- -GCUCgCGGCCACG-------CGAG------GGCgCAGGc -5'
26289 3' -64 NC_005345.2 + 7024 0.66 0.306707
Target:  5'- uGAGUG-CGGUccccuucgugaacgGCGCUCCgGuCGUCCu -3'
miRNA:   3'- gCUCGCgGCCA--------------CGCGAGGgC-GCAGGc -5'
26289 3' -64 NC_005345.2 + 12702 0.66 0.301722
Target:  5'- -uGGCGgUGGUGgGCgaugcagCCCGUGUUCGc -3'
miRNA:   3'- gcUCGCgGCCACgCGa------GGGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 33594 0.66 0.301722
Target:  5'- gCGGuCGCCGGUGCcgccguGUUCuccgCCGCGUUCGu -3'
miRNA:   3'- -GCUcGCGGCCACG------CGAG----GGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 22593 0.66 0.294709
Target:  5'- gCGAGCcCCGGgcguugcaUGCGCUgcgCCUGCGgugguUCCGg -3'
miRNA:   3'- -GCUCGcGGCC--------ACGCGA---GGGCGC-----AGGC- -5'
26289 3' -64 NC_005345.2 + 6409 0.66 0.294709
Target:  5'- cCGGGUGCCGGUccgauccgaGaCGUUCCUGCuGUCg- -3'
miRNA:   3'- -GCUCGCGGCCA---------C-GCGAGGGCG-CAGgc -5'
26289 3' -64 NC_005345.2 + 31296 0.66 0.287824
Target:  5'- cCGAGgauuccCGCCGG-GCGCUgCUGCGcggUCUGg -3'
miRNA:   3'- -GCUC------GCGGCCaCGCGAgGGCGC---AGGC- -5'
26289 3' -64 NC_005345.2 + 6711 0.66 0.281066
Target:  5'- aCGAGCaGCCGGcgggcacggUGUGCaagCCCaCGUCCc -3'
miRNA:   3'- -GCUCG-CGGCC---------ACGCGa--GGGcGCAGGc -5'
26289 3' -64 NC_005345.2 + 37505 0.67 0.277072
Target:  5'- cCGGGCGCgggcugcggcgCGGUGCGCucgcucuccgcccacUCCCGCcagcggCCGc -3'
miRNA:   3'- -GCUCGCG-----------GCCACGCG---------------AGGGCGca----GGC- -5'
26289 3' -64 NC_005345.2 + 42957 0.67 0.267929
Target:  5'- aGGGCGCCGcGgaacGCGCggaaCUGCG-CCGg -3'
miRNA:   3'- gCUCGCGGC-Ca---CGCGag--GGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 5638 0.67 0.267929
Target:  5'- gCGAGCGCCGG---GUUCgCCGCGaCCu -3'
miRNA:   3'- -GCUCGCGGCCacgCGAG-GGCGCaGGc -5'
26289 3' -64 NC_005345.2 + 24635 0.67 0.267929
Target:  5'- cCGGGCGCCucgcGGUG-GUcgaccaggaUCCCGCGggcCCGg -3'
miRNA:   3'- -GCUCGCGG----CCACgCG---------AGGGCGCa--GGC- -5'
26289 3' -64 NC_005345.2 + 2799 0.67 0.261549
Target:  5'- -cGGCGCCGGcgUGCGCUcgaucgCCUGC-UCCa -3'
miRNA:   3'- gcUCGCGGCC--ACGCGA------GGGCGcAGGc -5'
26289 3' -64 NC_005345.2 + 8456 0.67 0.255293
Target:  5'- aCGGGCG-CGGUcGCGaCUCCCGUuUCgGg -3'
miRNA:   3'- -GCUCGCgGCCA-CGC-GAGGGCGcAGgC- -5'
26289 3' -64 NC_005345.2 + 5731 0.67 0.255293
Target:  5'- gCGGGCGUCGaacuUGgGCaCUCGCGUCCa -3'
miRNA:   3'- -GCUCGCGGCc---ACgCGaGGGCGCAGGc -5'
26289 3' -64 NC_005345.2 + 26987 0.67 0.243149
Target:  5'- -cAGCGCCGGcGCuGCUCgCCacaGCGUCgCGg -3'
miRNA:   3'- gcUCGCGGCCaCG-CGAG-GG---CGCAG-GC- -5'
26289 3' -64 NC_005345.2 + 14841 0.67 0.243149
Target:  5'- cCGAGCagcuuGCCGGgcugcagcggGCGCUCgaCGCGgCCGa -3'
miRNA:   3'- -GCUCG-----CGGCCa---------CGCGAGg-GCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 38445 0.67 0.241962
Target:  5'- aCGAGCugccgcaggacagGCCGGgcacaGCGCgggcacuUCCCGCG-CCGc -3'
miRNA:   3'- -GCUCG-------------CGGCCa----CGCG-------AGGGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 31446 0.68 0.23149
Target:  5'- uGAGCGCgGGUGCGaggcgCCgGgGUgCGg -3'
miRNA:   3'- gCUCGCGgCCACGCga---GGgCgCAgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.