Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2629 | 3' | -55.9 | NC_001491.2 | + | 107436 | 0.76 | 0.386275 |
Target: 5'- ----uCGUGCUGGCGUGUCAGgucCAGCc -3' miRNA: 3'- cuuuuGCACGGCCGCGCGGUCa--GUCG- -5' |
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2629 | 3' | -55.9 | NC_001491.2 | + | 119347 | 0.67 | 0.85344 |
Target: 5'- aGGAAcCG-GCUauGGCGCGCguguuGGUCAGCg -3' miRNA: 3'- -CUUUuGCaCGG--CCGCGCGg----UCAGUCG- -5' |
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2629 | 3' | -55.9 | NC_001491.2 | + | 121613 | 0.73 | 0.514221 |
Target: 5'- uGGAAACGacgcaGCCGcGCGCGCUAGguaugUAGCg -3' miRNA: 3'- -CUUUUGCa----CGGC-CGCGCGGUCa----GUCG- -5' |
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2629 | 3' | -55.9 | NC_001491.2 | + | 134861 | 0.67 | 0.837312 |
Target: 5'- ---cAC-UGCaCGGCGCGCUAGUUuuauaGGCu -3' miRNA: 3'- cuuuUGcACG-GCCGCGCGGUCAG-----UCG- -5' |
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2629 | 3' | -55.9 | NC_001491.2 | + | 144467 | 0.67 | 0.845473 |
Target: 5'- -cGAGCG-GCCGGCGUuugGCCA-UgGGCg -3' miRNA: 3'- cuUUUGCaCGGCCGCG---CGGUcAgUCG- -5' |
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2629 | 3' | -55.9 | NC_001491.2 | + | 144566 | 1.12 | 0.001772 |
Target: 5'- gGAAAACGUGCCGGCGCGCCAGUCAGCg -3' miRNA: 3'- -CUUUUGCACGGCCGCGCGGUCAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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