Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26290 | 5' | -63.5 | NC_005345.2 | + | 22998 | 1.07 | 0.000219 |
Target: 5'- gCUCGGGGUCCUCGCCGAGGUCGGGCAu -3' miRNA: 3'- -GAGCCCCAGGAGCGGCUCCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 29989 | 0.77 | 0.053979 |
Target: 5'- gUCGGcGUCCUCgGCCGGGGUCcGGGUg -3' miRNA: 3'- gAGCCcCAGGAG-CGGCUCCAG-CCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 2024 | 0.72 | 0.112572 |
Target: 5'- cCUCGGcGUCCUCGUCGAG--CGGGCc -3' miRNA: 3'- -GAGCCcCAGGAGCGGCUCcaGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 31438 | 0.72 | 0.118742 |
Target: 5'- gUCGguucacGGGUCCcgUCGCCGAGGcCGGcGCGg -3' miRNA: 3'- gAGC------CCCAGG--AGCGGCUCCaGCC-CGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 4349 | 0.72 | 0.121943 |
Target: 5'- -cCGGGGUCCU-GCCucGGgCGGGCGg -3' miRNA: 3'- gaGCCCCAGGAgCGGcuCCaGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 18552 | 0.71 | 0.135568 |
Target: 5'- gCUCGGGG-CgCUCGCCGGGugcgcgcccagcGUCGGGa- -3' miRNA: 3'- -GAGCCCCaG-GAGCGGCUC------------CAGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 33268 | 0.71 | 0.15058 |
Target: 5'- gCUCGgugcccGGGUCCaUGUCGAGGaugCGGGCGg -3' miRNA: 3'- -GAGC------CCCAGGaGCGGCUCCa--GCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 31783 | 0.7 | 0.15864 |
Target: 5'- -gCGGGGUCgacgcacucgggUUCGCCGuccGGGUCGGGg- -3' miRNA: 3'- gaGCCCCAG------------GAGCGGC---UCCAGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 18579 | 0.69 | 0.179131 |
Target: 5'- cCUCGGuGagguacagcccgccGUCCUCGCCGAgGGUCucGGCAu -3' miRNA: 3'- -GAGCC-C--------------CAGGAGCGGCU-CCAGc-CCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 31449 | 0.69 | 0.194891 |
Target: 5'- -gCGcGGGUgCgaggCGCCGGGGUgCGGGUg -3' miRNA: 3'- gaGC-CCCAgGa---GCGGCUCCA-GCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 10041 | 0.68 | 0.210258 |
Target: 5'- -gCGGGcUgCUCGCCGAGGacgcgaUCGGGUu -3' miRNA: 3'- gaGCCCcAgGAGCGGCUCC------AGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22654 | 0.68 | 0.226657 |
Target: 5'- --aGGGGUcgaCCU-GCgGAcGGUCGGGCAg -3' miRNA: 3'- gagCCCCA---GGAgCGgCU-CCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 36213 | 0.68 | 0.226657 |
Target: 5'- -aCGGGGUaCCUCuucuGUCG-GGUaCGGGCGa -3' miRNA: 3'- gaGCCCCA-GGAG----CGGCuCCA-GCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22188 | 0.68 | 0.23236 |
Target: 5'- aUCGGGuucGUCCUCGaCGGGGaCGGGa- -3' miRNA: 3'- gAGCCC---CAGGAGCgGCUCCaGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 34528 | 0.68 | 0.23236 |
Target: 5'- gCUCccGGUCCUCGCgaAGGUCgGGGCGc -3' miRNA: 3'- -GAGccCCAGGAGCGgcUCCAG-CCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 42370 | 0.68 | 0.244128 |
Target: 5'- aCUCcagccgCCacaCGCCGAGGUCGGGCAu -3' miRNA: 3'- -GAGcccca-GGa--GCGGCUCCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22782 | 0.68 | 0.244128 |
Target: 5'- cCUCGGGaGggauccgcgcgaUCCUCGgCGGGGggCGGGUc -3' miRNA: 3'- -GAGCCC-C------------AGGAGCgGCUCCa-GCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 30132 | 0.67 | 0.260161 |
Target: 5'- gCUCGGGcggcgacGUCgaggcgccgccccgCUCggGCCGAGGcUCGGGCAu -3' miRNA: 3'- -GAGCCC-------CAG--------------GAG--CGGCUCC-AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 23671 | 0.67 | 0.26143 |
Target: 5'- gUCGGGGUugucgaguuccggcgUCUCGUCGAGcaugucgcccccucUCGGGCAg -3' miRNA: 3'- gAGCCCCA---------------GGAGCGGCUCc-------------AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 17872 | 0.67 | 0.262703 |
Target: 5'- cCUCGGGGUCCgccguggcguagUCGCCGAucaCGGcGCc -3' miRNA: 3'- -GAGCCCCAGG------------AGCGGCUccaGCC-CGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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