Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26290 | 5' | -63.5 | NC_005345.2 | + | 1764 | 0.66 | 0.317825 |
Target: 5'- aUCGGcGG-CUUaCGCgCGGGGUCaGGCAg -3' miRNA: 3'- gAGCC-CCaGGA-GCG-GCUCCAGcCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 2024 | 0.72 | 0.112572 |
Target: 5'- cCUCGGcGUCCUCGUCGAG--CGGGCc -3' miRNA: 3'- -GAGCCcCAGGAGCGGCUCcaGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 3936 | 0.67 | 0.269145 |
Target: 5'- gUCGaGGUgCUCGCCGcGGccggcagccucUCGGGCGg -3' miRNA: 3'- gAGCcCCAgGAGCGGCuCC-----------AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 4349 | 0.72 | 0.121943 |
Target: 5'- -cCGGGGUCCU-GCCucGGgCGGGCGg -3' miRNA: 3'- gaGCCCCAGGAgCGGcuCCaGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 9421 | 0.66 | 0.313404 |
Target: 5'- -gCGGGGU-CUCGCCGAcggacacauagcGGUcgcucucgugccaccCGGGCGc -3' miRNA: 3'- gaGCCCCAgGAGCGGCU------------CCA---------------GCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 10041 | 0.68 | 0.210258 |
Target: 5'- -gCGGGcUgCUCGCCGAGGacgcgaUCGGGUu -3' miRNA: 3'- gaGCCCcAgGAGCGGCUCC------AGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 15425 | 0.66 | 0.296188 |
Target: 5'- gCUCGGGGaaUCC-CGaagCGGGGUC-GGCAc -3' miRNA: 3'- -GAGCCCC--AGGaGCg--GCUCCAGcCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 17872 | 0.67 | 0.262703 |
Target: 5'- cCUCGGGGUCCgccguggcguagUCGCCGAucaCGGcGCc -3' miRNA: 3'- -GAGCCCCAGG------------AGCGGCUccaGCC-CGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 18552 | 0.71 | 0.135568 |
Target: 5'- gCUCGGGG-CgCUCGCCGGGugcgcgcccagcGUCGGGa- -3' miRNA: 3'- -GAGCCCCaG-GAGCGGCUC------------CAGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 18579 | 0.69 | 0.179131 |
Target: 5'- cCUCGGuGagguacagcccgccGUCCUCGCCGAgGGUCucGGCAu -3' miRNA: 3'- -GAGCC-C--------------CAGGAGCGGCU-CCAGc-CCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 21294 | 0.66 | 0.296188 |
Target: 5'- gUCGGGGgcgcCGCCGAGGaUCGGcCAc -3' miRNA: 3'- gAGCCCCaggaGCGGCUCC-AGCCcGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 21597 | 0.66 | 0.303271 |
Target: 5'- -cCGGGGUCCgacgaGCCGAuGccgCGGGUg -3' miRNA: 3'- gaGCCCCAGGag---CGGCUcCa--GCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22188 | 0.68 | 0.23236 |
Target: 5'- aUCGGGuucGUCCUCGaCGGGGaCGGGa- -3' miRNA: 3'- gAGCCC---CAGGAGCgGCUCCaGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22654 | 0.68 | 0.226657 |
Target: 5'- --aGGGGUcgaCCU-GCgGAcGGUCGGGCAg -3' miRNA: 3'- gagCCCCA---GGAgCGgCU-CCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22782 | 0.68 | 0.244128 |
Target: 5'- cCUCGGGaGggauccgcgcgaUCCUCGgCGGGGggCGGGUc -3' miRNA: 3'- -GAGCCC-C------------AGGAGCgGCUCCa-GCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22998 | 1.07 | 0.000219 |
Target: 5'- gCUCGGGGUCCUCGCCGAGGUCGGGCAu -3' miRNA: 3'- -GAGCCCCAGGAGCGGCUCCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 23671 | 0.67 | 0.26143 |
Target: 5'- gUCGGGGUugucgaguuccggcgUCUCGUCGAGcaugucgcccccucUCGGGCAg -3' miRNA: 3'- gAGCCCCA---------------GGAGCGGCUCc-------------AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 24998 | 0.67 | 0.262703 |
Target: 5'- gUCGaGGUgCUCGCCGcGGUCGccgaGGCGu -3' miRNA: 3'- gAGCcCCAgGAGCGGCuCCAGC----CCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 29584 | 0.66 | 0.296188 |
Target: 5'- -gCGGGGUCCUUccaGUgGuGGgagaUCGGGCGu -3' miRNA: 3'- gaGCCCCAGGAG---CGgCuCC----AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 29989 | 0.77 | 0.053979 |
Target: 5'- gUCGGcGUCCUCgGCCGGGGUCcGGGUg -3' miRNA: 3'- gAGCCcCAGGAG-CGGCUCCAG-CCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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