Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26290 | 5' | -63.5 | NC_005345.2 | + | 2024 | 0.72 | 0.112572 |
Target: 5'- cCUCGGcGUCCUCGUCGAG--CGGGCc -3' miRNA: 3'- -GAGCCcCAGGAGCGGCUCcaGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 37532 | 0.66 | 0.295487 |
Target: 5'- gCUCGGcGGgcugugauccCCUCGCCggcaccucggcccGAGG-CGGGCGc -3' miRNA: 3'- -GAGCC-CCa---------GGAGCGG-------------CUCCaGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 30132 | 0.67 | 0.260161 |
Target: 5'- gCUCGGGcggcgacGUCgaggcgccgccccgCUCggGCCGAGGcUCGGGCAu -3' miRNA: 3'- -GAGCCC-------CAG--------------GAG--CGGCUCC-AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22782 | 0.68 | 0.244128 |
Target: 5'- cCUCGGGaGggauccgcgcgaUCCUCGgCGGGGggCGGGUc -3' miRNA: 3'- -GAGCCC-C------------AGGAGCgGCUCCa-GCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 34528 | 0.68 | 0.23236 |
Target: 5'- gCUCccGGUCCUCGCgaAGGUCgGGGCGc -3' miRNA: 3'- -GAGccCCAGGAGCGgcUCCAG-CCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22654 | 0.68 | 0.226657 |
Target: 5'- --aGGGGUcgaCCU-GCgGAcGGUCGGGCAg -3' miRNA: 3'- gagCCCCA---GGAgCGgCU-CCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 34161 | 0.66 | 0.296188 |
Target: 5'- -aCGGauccgaGUCCUCgGCCGAGGgauucaaggcgcUCGGGCu -3' miRNA: 3'- gaGCCc-----CAGGAG-CGGCUCC------------AGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 33707 | 0.66 | 0.289235 |
Target: 5'- gCUCGGGGcCgUCGCgggCGAGGUguacgccaaGGGCu -3' miRNA: 3'- -GAGCCCCaGgAGCG---GCUCCAg--------CCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 22188 | 0.68 | 0.23236 |
Target: 5'- aUCGGGuucGUCCUCGaCGGGGaCGGGa- -3' miRNA: 3'- gAGCCC---CAGGAGCgGCUCCaGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 10041 | 0.68 | 0.210258 |
Target: 5'- -gCGGGcUgCUCGCCGAGGacgcgaUCGGGUu -3' miRNA: 3'- gaGCCCcAgGAGCGGCUCC------AGCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 31438 | 0.72 | 0.118742 |
Target: 5'- gUCGguucacGGGUCCcgUCGCCGAGGcCGGcGCGg -3' miRNA: 3'- gAGC------CCCAGG--AGCGGCUCCaGCC-CGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 18552 | 0.71 | 0.135568 |
Target: 5'- gCUCGGGG-CgCUCGCCGGGugcgcgcccagcGUCGGGa- -3' miRNA: 3'- -GAGCCCCaG-GAGCGGCUC------------CAGCCCgu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 24998 | 0.67 | 0.262703 |
Target: 5'- gUCGaGGUgCUCGCCGcGGUCGccgaGGCGu -3' miRNA: 3'- gAGCcCCAgGAGCGGCuCCAGC----CCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 15425 | 0.66 | 0.296188 |
Target: 5'- gCUCGGGGaaUCC-CGaagCGGGGUC-GGCAc -3' miRNA: 3'- -GAGCCCC--AGGaGCg--GCUCCAGcCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 31449 | 0.69 | 0.194891 |
Target: 5'- -gCGcGGGUgCgaggCGCCGGGGUgCGGGUg -3' miRNA: 3'- gaGC-CCCAgGa---GCGGCUCCA-GCCCGu -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 36213 | 0.68 | 0.226657 |
Target: 5'- -aCGGGGUaCCUCuucuGUCG-GGUaCGGGCGa -3' miRNA: 3'- gaGCCCCA-GGAG----CGGCuCCA-GCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 42370 | 0.68 | 0.244128 |
Target: 5'- aCUCcagccgCCacaCGCCGAGGUCGGGCAu -3' miRNA: 3'- -GAGcccca-GGa--GCGGCUCCAGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 23671 | 0.67 | 0.26143 |
Target: 5'- gUCGGGGUugucgaguuccggcgUCUCGUCGAGcaugucgcccccucUCGGGCAg -3' miRNA: 3'- gAGCCCCA---------------GGAGCGGCUCc-------------AGCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 9421 | 0.66 | 0.313404 |
Target: 5'- -gCGGGGU-CUCGCCGAcggacacauagcGGUcgcucucgugccaccCGGGCGc -3' miRNA: 3'- gaGCCCCAgGAGCGGCU------------CCA---------------GCCCGU- -5' |
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26290 | 5' | -63.5 | NC_005345.2 | + | 35531 | 0.67 | 0.275714 |
Target: 5'- gUCcGGuUCCUCGCgGGGcUCGGGCAc -3' miRNA: 3'- gAGcCCcAGGAGCGgCUCcAGCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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